GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005213-TA|BGIBMGA005213-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   1.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   1.3  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
          protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 50 PGDFIKAMKEMDGRYVGSRPIKLRKSTWKNR 80
          P +  K M  M G Y+    + +    W+N+
Sbjct: 48 PDEASKTMAMMKGEYIPENALPVGIEIWRNK 78


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 21  KYSSFQRAKVIRDKRTNKSK 40
           K     R K+I +KR NK+K
Sbjct: 454 KIMDMVREKIIEEKRKNKNK 473


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.139    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,798
Number of Sequences: 429
Number of extensions: 835
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)