GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005211-TA|BGIBMGA005211-PA|undefined
         (417 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   0.39 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   6.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   6.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 348 YDYFKTKNDVDGKTKENSGFALTLSEIHSPEKVPSPVGTHREVEVLHNLQRSPVVSPRRQ 407
           Y Y+  +     K KE+    +  S+  S    P P  T  ++  L +L+ SP+ S R +
Sbjct: 327 YTYWGARAKKKSKKKESDDKKVISSKSGSKANSPFPGSTEADIIELQDLRMSPLPSIRNR 386


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 263 DSENTTTDDDHKNNRAITETDNVEVISTRTIDTKTNDNRESLENSQKKQTKRSG 316
           +++N   D+ + NN+     +  +    R  D + NDN+++   +++   K++G
Sbjct: 431 NADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQN--GNRQNDNKQNG 482


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 34  YIAIRDRLTHPEWEVRLHALRVLADLLPLSGECSGVSLRSSGEKLFDPVHAD 85
           YI I+D L +  W  R  A+  +A +  L+G  S V +     +  +PV  D
Sbjct: 124 YIHIKDPLRYGRWVTRRIAVAGIAVVWLLAGLISFVPISLGLHRANEPVVLD 175


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 119  RILCETYDEDSLDVYYAPRKNIFR 142
            R LC  +D DS + +  P+  +FR
Sbjct: 1595 RGLCGNFDHDSTNDFVGPKNCLFR 1618


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 372 SEIHSPEKVPSPVGTHREVEVLHNLQRS 399
           S I + EK+ +   TH +V   H ++RS
Sbjct: 675 SRIKTTEKLSTDPNTHFQVNQSHGIKRS 702


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 261 TPDSENTTTDDDHKNNRAITETDNVEVISTRTIDTKTNDNRESLENS 307
           T  + ++   D    + +++E+D V+VI   +  + T+D+  S+++S
Sbjct: 184 TSSTASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTDDH-SSVQSS 229


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 139 NIFRDNNNQQSFKLNHVSNKTVPTPL 164
           N   +N  Q  + +NH+    VP P+
Sbjct: 93  NYNNNNYKQLCYNINHIEQIPVPVPV 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,489
Number of Sequences: 429
Number of extensions: 4765
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 417
length of database: 140,377
effective HSP length: 59
effective length of query: 358
effective length of database: 115,066
effective search space: 41193628
effective search space used: 41193628
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)