GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005209-TA|BGIBMGA005209-PA|undefined
         (67 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   0.31 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   1.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    23   6.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    23   6.6  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    22   8.7  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    22   8.7  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 0.31
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 13  DKFKNNMGAYSE----EQGERFHQDIMNFEQRYQGQ-YNENIMGDYISMPPMNNTLTPNS 67
           D+ +N   +YSE    E  E   ++    E+ + G  ++E     ++++PP+ NTL+  S
Sbjct: 105 DEAENEETSYSEQNHTENTEEIAEESRPLERTHSGSNHHEASSTGHLNLPPLENTLSQGS 164


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 25  EQGERFHQDIMNFEQRYQGQYNENIMGDYISMPPMNNTLTPN 66
           E+ ER  +++ N    ++ +       D  + PP N T  PN
Sbjct: 90  EEDERCARELANRYNSHRPERRRKTNNDRRNYPPQNRTAKPN 131


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 17  NNMGAYSEEQGERFHQDIMNFEQRYQGQY 45
           N  G+      ER  QD+M  EQ + G++
Sbjct: 329 NVFGSAGAALRERTQQDLMANEQEHSGEF 357


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 5   EHMLHAHLDKFKNNMGAYSEEQGERFHQDIMNF 37
           E  + A LD+FK+     S+E   +    ++NF
Sbjct: 821 ESRIRALLDQFKSEFLEMSDEDFSKHKSSLINF 853


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 2   SLKEHMLHAHLDKFKNNMGAYSEEQGERFH 31
           S+  + +HA +   K ++G Y++ Q + FH
Sbjct: 202 SVLVYEIHARIALEKGDVGEYNQCQTQLFH 231


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 31  HQDIMNFEQRYQGQYNENIMGDYISMP 57
           H  + N   + +G+  EN  GD  S+P
Sbjct: 87  HSTVANQSWQQKGENQENNSGDINSLP 113


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,102
Number of Sequences: 5004
Number of extensions: 13308
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 2,362,478
effective HSP length: 47
effective length of query: 20
effective length of database: 2,127,290
effective search space: 42545800
effective search space used: 42545800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)