GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005209-TA|BGIBMGA005209-PA|undefined
         (67 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   0.31 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   0.54 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   5.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   5.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   6.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    19   6.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   8.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    18   8.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    18   8.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      18   8.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 0.31
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 8   LHAHLDKFKNNMGAYSEEQGER 29
           + AHL K +  +GAY  E+G +
Sbjct: 188 VEAHLRKGRGAIGAYGPEKGPK 209


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.2 bits (45), Expect = 0.54
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 33  DIMNFEQRYQGQYNENIMGDYISMPPMNN 61
           +++NF +R    ++EN++ D+    P NN
Sbjct: 80  ELLNFPKR---SFSENMINDHRQPAPTNN 105


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 2/18 (11%)

Query: 37  FEQRYQGQY--NENIMGD 52
           FE RYQG++   E I+G+
Sbjct: 416 FEHRYQGKFFDEELILGE 433


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 22   YSEEQGERFHQDIMNFE 38
            +S+E G+  H  IMN +
Sbjct: 1032 FSKEDGKEHHLQIMNLK 1048


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 2/18 (11%)

Query: 37  FEQRYQGQY--NENIMGD 52
           FE RYQG++   E I+G+
Sbjct: 384 FEHRYQGKFFDEELILGE 401


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 42  QGQYNENIMGDYISMPPM 59
           Q  YNENI   + S PP+
Sbjct: 544 QLNYNENIERFFKSKPPV 561


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 33  DIMNFEQRYQGQYNENIMGDYIS 55
           +I++F+Q   G+Y    +G Y+S
Sbjct: 541 NIIHFKQIEPGKYEWVRVGKYLS 563


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 9   HAHLDKFKNNMGAYSEEQGERFHQDIMNFEQRYQGQYNE 47
           H HL    +++ + + +   R +Q     +QR Q +  E
Sbjct: 141 HHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEE 179


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 36  NFEQRYQGQYNENIMGDYISMPP 58
           N+E RY+        GD + +PP
Sbjct: 122 NYEVRYKSNVLIYPNGDVLWVPP 144


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 42 QGQYNENIMGDYISMPPMNNTLTPNS 67
          Q Q+ +NIM   +      +T+ PNS
Sbjct: 1  QIQHLKNIMKPLMEFSATLDTVVPNS 26


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
          channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 56 MPPMNNTLTPN 66
          +PP+  TLT N
Sbjct: 79 LPPVQGTLTVN 89


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
          channel variant 3 protein.
          Length = 475

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 56 MPPMNNTLTPN 66
          +PP+  TLT N
Sbjct: 79 LPPVQGTLTVN 89


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
          channel protein.
          Length = 458

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 56 MPPMNNTLTPN 66
          +PP+  TLT N
Sbjct: 79 LPPVQGTLTVN 89


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 38  EQRYQGQYNENIMGDYISMPPMNN 61
           E+R    ++E      +  PP+NN
Sbjct: 180 ERRTPDPHDETAKKPRVLSPPLNN 203


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,610
Number of Sequences: 429
Number of extensions: 1078
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 67
length of database: 140,377
effective HSP length: 45
effective length of query: 22
effective length of database: 121,072
effective search space:  2663584
effective search space used:  2663584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)