GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005208-TA|BGIBMGA005208-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (295 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    39   5e-05
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 9  VGRVVIVTGANSGIGFQTAKDLARRGARVILGCRSVDRGTKARDEIISVTNNKNVVFKQI 68
          +  V +VTGANSGIG    + L  +G +VI     VD+     +E+ S      +V  Q 
Sbjct: 6  IDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPG--KLVPLQC 63

Query: 69 DLSSLRSVREFAKDIIETENELHVLINNA 97
          DLS+   + +  + + +    + +LINNA
Sbjct: 64 DLSNQNDILKVIEWVEKNLGAIDILINNA 92


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 134 KKSQPSRIVNVSSIFNLFGTINFKDDNHKSFYN 166
           ++S+ S+I++  S   +    N+K+ N K +YN
Sbjct: 307 ERSKESKIISSLSNKTIHNNNNYKNYNKKLYYN 339


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 82  DIIETENELHVLINNAGMFSSEKSYTEDGIDTVMQVNYFG 121
           D+I   N  HV++ + G +S         +    ++N +G
Sbjct: 479 DVISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYG 518


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 82  DIIETENELHVLINNAGMFSSEKSYTEDGIDTVMQVNYFG 121
           D+I   N  HV++ + G +S         +    ++N +G
Sbjct: 479 DVISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYG 518


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,153
Number of Sequences: 429
Number of extensions: 3053
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 295
length of database: 140,377
effective HSP length: 57
effective length of query: 238
effective length of database: 115,924
effective search space: 27589912
effective search space used: 27589912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)