GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005207-TA|BGIBMGA005207-PA|IPR000873|AMP-dependent
synthetase and ligase
         (501 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 292 VKSLYGLTETTACIFQSNQGDSIDVVAE---TVGYIQDHVEVKVVNEQGEIVPFETPGEL 348
           V  + GL     C+F    GDS++  +    T   +Q H+              +  GE+
Sbjct: 527 VAGIVGLKMPRYCLF----GDSVNTASRMEATSQAMQIHISQSTKELLSPSYRVKERGEI 582

Query: 349 VVRGYNNMICYWNEPEKTRQTLDK 372
            V+G   M  YW E  + R +  K
Sbjct: 583 EVKGKGIMKTYWLEKREHRSSSTK 606


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,452
Number of Sequences: 429
Number of extensions: 6152
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 1
length of query: 501
length of database: 140,377
effective HSP length: 61
effective length of query: 440
effective length of database: 114,208
effective search space: 50251520
effective search space used: 50251520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)