Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005206-TA|BGIBMGA005206-PA|undefined
(268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 30 0.40
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 29 0.70
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 29 0.70
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac... 28 1.6
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 28 1.6
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 28 1.6
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 2.8
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 27 3.7
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 26 6.5
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 6.5
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 6.5
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 26 6.5
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.6
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 29.9 bits (64), Expect = 0.40
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 172 LAFEEPVADAEERQMAVMEKLVKVMSDQAAAMTQLAHASHVNAQAMERLAEASHIQARAI 231
+ ++ +A A ++A MEK ++ + D+ + + L + QA+ + I+ + I
Sbjct: 75 VCLQDDLAAATPEELAEMEKQIQELKDEVSVVKTLYKEKCIELQALNNSLSPAEIREK-I 133
Query: 232 ERLANTFDTISAATHDVRNAIV 253
+ + + S+ +RN V
Sbjct: 134 QSIDKEIEETSSKLESLRNGTV 155
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 29.1 bits (62), Expect = 0.70
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 115 DPNSLCSNIEKKIWDVFLANDNSRTNRGAVKQESHYTEDNFFNEDSMDQNHVES--DPV- 171
D + N+E+++ V N+ ++T A+ H DNF ++ S+ Q ++ PV
Sbjct: 51 DLRTTAINLEEQLETVQNENEENKTKLAALLNRFHEETDNFLSKLSLCQQEIQDTFKPVE 110
Query: 172 --LAFEEPVADAEERQMAVMEKLVKVMSDQAAAMTQLAHASHVNAQAMERLAEASHIQAR 229
LA++ D+E+ + K + + +QA L + S + + + E + + +
Sbjct: 111 ANLAYDVD-TDSEDLDEESVVKDTEEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQK 169
Query: 230 AIERLANTF-DTISA 243
+R AN F DT SA
Sbjct: 170 --KREANVFSDTQSA 182
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.1 bits (62), Expect = 0.70
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 110 QGCGGDPNSLCSNIEKKIWDVFLANDNSRTNRGAVKQESH-----YTED-NFFNEDSMDQ 163
QG D N+L +N E + ++ + S N G +KQ+ + TED N E+ D+
Sbjct: 56 QGDPIDKNNLNTNTENNLPNIVNFQNISSANSGEIKQKDNEILFSSTEDINQHKENYQDE 115
Query: 164 NHVESDPVLAFEEPVADAEERQMAVMEKLVKVMSDQAAAMTQLAHASHVNAQAMERLAEA 223
N ++ V A P D ++ + +S++ + + N + + +AE
Sbjct: 116 NKIDLLDV-ALANP-KDCVVPSSGLLMPKEEFISNEEVGIPATNSSEKSNVKIADEIAEV 173
Query: 224 SH 225
+H
Sbjct: 174 TH 175
>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 14 TRQTDFYWRTDSTSATLDGAVPSRPSLEQVTAIVDFMEKH 53
+RQ YW T+S S + S P LE+V + ++ H
Sbjct: 74 SRQIKSYWLTNSLSTSFPTVDYSEPDLEKVKRTLTKLQNH 113
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 166 VESDPVLAFEEPVADAEERQMAVMEKLVKVMSDQAAAMTQLAHASHVNAQAMERLAEASH 225
+ESD + F+E V A+ A +EK++ + SH+ E L +
Sbjct: 400 IESDGLFTFDEQVEIAKSFPNATLEKIISAEGHDGFLLEFTQVNSHIQKFQKEHLIDIMS 459
Query: 226 IQARAIERL 234
Q + ERL
Sbjct: 460 -QTNSFERL 467
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 125 KKIWDVFLANDNSRTNRGAVKQESHYTEDNFFNEDSMDQN-HVESDPVLAFEEPVADAEE 183
K++ D+F ++D N + S E+ F N D +D + ++ D + E + A++
Sbjct: 327 KELDDLFGSDDEQSQNVNDLDGNSANEENEFINHDGLDSSLDLDGDSYMVDENDLNLAKK 386
Query: 184 R-QMAVMEKLVKVMSDQAAAMTQLAHAS 210
R Q A++++ + + ++ +L AS
Sbjct: 387 RKQKALIDRTTTI--ENGSSKRRLLQAS 412
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 133 ANDNSRTNRGAVKQESHYTEDNFFNEDSMDQNHVESDPVL 172
+NDN T +K Y + N+D+ D + VE DP+L
Sbjct: 138 SNDNELT---VMKLSQLYKTQHDENDDASDNSDVEEDPIL 174
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/50 (22%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 157 NEDSMDQNHVESDPVLAFEEPVADAEERQMAVMEKLVKVMSDQAAAMTQL 206
N+ + +NH E +P+L EE +++ +R+ ++ +++ + D++ + T +
Sbjct: 206 NKKAPLENHKEKEPLLPKEEKLSEQAKRERDDLKNIMQ-LEDESVSTTSV 254
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 109 VQGCGGDPNSLCSNIEKK 126
VQ GG S CSNIE+K
Sbjct: 328 VQAVGGSIQSTCSNIEEK 345
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 97 YWADKKSTVRSKVQGCGGDPNSLCSNIEKKIWDVFLAND 135
Y ++S S ++G G P S+ SNI ++ND
Sbjct: 98 YTPGEESCTNSTIKGMSGKPTSIISNIYTTTGPAKVSND 136
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 213 NAQAMERLAEASHIQARAIERLANTFDTISAATHDVRNAIVDIDATMK 260
NA+++ER+AE S A A ++ + D + ++ +V+++ + K
Sbjct: 143 NAKSVERIAEVSGNYALAGAQIISPSDCMDGRVKAIKQKLVELELSHK 190
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 142 GAVKQESHYTEDNFFNEDSMDQNHVESDPVLAFEEPV 178
G V++ H E F S ++ ++ S +AFE+PV
Sbjct: 281 GIVRRNPHGKEIRFITNLSEEEKNMASKISIAFEQPV 317
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 72 KLWLKLTRIVNNISGPTRPMKSWIKYWADKKS 103
K+ K+ R+ +I RP+ IKYWA +++
Sbjct: 169 KINTKMLRLFVSIDPRVRPLGLIIKYWAKQRA 200
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 7 VTTDNIETRQTDFYWRTDSTSATLDGAVPSRPSLEQVTAIVDFMEKHPA 55
VT D +ET D + S S +G+V + + + A++ HPA
Sbjct: 30 VTEDKLETSAKDKKHESPSMSEDEEGSVENVDAWDLTKALMSIDPNHPA 78
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.125 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,145,494
Number of Sequences: 5004
Number of extensions: 43337
Number of successful extensions: 112
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 14
length of query: 268
length of database: 2,362,478
effective HSP length: 72
effective length of query: 196
effective length of database: 2,002,190
effective search space: 392429240
effective search space used: 392429240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)
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