Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005205-TA|BGIBMGA005205-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR003954|RNA recognition, region 1
(153 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 45 6e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 6e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 7e-05
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 41 7e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 41 1e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 41 1e-04
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 40 1e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 39 3e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 39 3e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 7e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 9e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.004
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 36 0.004
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 35 0.005
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 35 0.005
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.006
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.008
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.011
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.014
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.019
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.025
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 32 0.033
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.033
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 32 0.044
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.058
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.058
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 31 0.058
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.077
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.13
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 30 0.13
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.13
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 30 0.18
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.24
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.24
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 0.31
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.54
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 1.3
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 1.7
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 2.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 2.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 2.9
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 2.9
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.1
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 24 8.8
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 24 8.8
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 44.8 bits (101), Expect = 6e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYG----------KLNSVWVALNPPGFAFIEFENLQEAED 57
+YVG L + DL F+ +G K N + +P FAFI FEN A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 58 ACSAMNGTEMLGATLKVE 75
A +++NG+ G TLKVE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.8 bits (101), Expect = 6e-06
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 5 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 59
G ++V G+ +++++L++ F K+G + V + P GF F+ F ++EA A
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
Query: 60 SAMNGTEMLGATLKVEISRK 79
+N E G L V+ +++
Sbjct: 160 DNLNSQEFYGRVLNVQKAKR 179
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.1 bits (92), Expect = 7e-05
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 7 RVYVGGLVEGIKK-EDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 61
R+ + L IKK + LE F K+GK+ + + G FAF+ ++ + AE+A ++
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 62 MNGTEMLGATLKVE 75
+NGTE+ G + V+
Sbjct: 168 LNGTEIDGRPIAVD 181
Score = 34.7 bits (76), Expect = 0.006
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 1 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEA 55
M+S T ++V L K++DL F G + V NP G+ F+ F L++A
Sbjct: 1 MNSNST-LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDA 59
Query: 56 EDACSAMNGTEMLGATLKVEIS 77
+ A + ++ G L+++ +
Sbjct: 60 QRAAKELKNKKLHGRILRLDFA 81
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 41.1 bits (92), Expect = 7e-05
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 6 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 65
TR++VG + +ED+ F YG++ + +N GF F+E E+ ++A D + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGK 60
Query: 66 EMLGATLKVEISR 78
E +G+ + VE +R
Sbjct: 61 EFMGSRIVVEPAR 73
Score = 30.3 bits (65), Expect = 0.13
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 5 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 64
G R+ V L E + +DL+ K G+ PG +EF ++ +A +++NG
Sbjct: 97 GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNG 156
Query: 65 TEMLG 69
+ G
Sbjct: 157 EVIKG 161
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 5 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACS 60
GT++ + L K+D++ YG+L SV V + GFAF EF +EA +A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Query: 61 AMNGTEMLGATLKVE 75
A+ T +LG L ++
Sbjct: 780 ALKNTHLLGRHLVLQ 794
Score = 34.3 bits (75), Expect = 0.008
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 7 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSA 61
R+++ L ++DL+ F +G+L V + + NP GFA+I+F + +A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 62 MNGTEMLGATLKV 74
++ G L V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 32.3 bits (70), Expect = 0.033
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 8 VYVGGLVEGIKKEDLEREFDKY-GKLNSVWVALNPP---------GFAFIEFENLQEAED 57
+YV L K+E+ ++ F G L++V A P GF F+EF++ A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 58 ACSAMNGTEMLGATLKVEISRK 79
A AMNG + G L++++S +
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQ 702
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 40.7 bits (91), Expect = 1e-04
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 3 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSA 61
+ + V+VGGL + + +E+L+ F +G++ V+V + P G F++F N Q AE A +
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKGCGFVQFVNRQSAEIAINQ 357
Query: 62 MNGTEMLGATLKVEISR 78
+ G + + +++ R
Sbjct: 358 LQGYPLGNSRIRLSWGR 374
>SPBP16F5.06 |||ribosome biogenesis protein
Nop6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 40.3 bits (90), Expect = 1e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 7 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV--ALNPPG----FAFIEFENLQEAEDAC- 59
R+YVGGL I+ DLE F ++G ++++ + P G FA++ F ++ C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 60 SAMNGTEMLGATLKVEISR 78
S ++ G+ L++E +R
Sbjct: 66 SYLSNATFKGSKLRIEEAR 84
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 39.1 bits (87), Expect = 3e-04
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMN 63
+YV G +G++ +L EF+ +G L + + FAF+E+E+ ++AEDA ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 64 G--TEMLGATLKVEISRK 79
G E G L+VE +++
Sbjct: 69 GRRLERGGGVLRVEWAKQ 86
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 39.1 bits (87), Expect = 3e-04
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 62
+++ L K+ D+EREF +YG + + V N G+AF+ FE ++ + A A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 63 NGTEMLGATLKVEISR 78
G + G + V++ R
Sbjct: 162 AGLMLNGRRIVVDVER 177
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.9 bits (84), Expect = 7e-04
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 6 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 64
T V+VGGL + ++DL+ F +G++ ++ + G F+++ AE A + M G
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG-KGCGFVQYSEKSAAEKAINTMQG 354
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 9e-04
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 19 KEDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 76
++D++ E D KYGK+ + V N G F++FEN AE A + ++ G T+K I
Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588
Score = 33.1 bits (72), Expect = 0.019
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 7 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 62
R+ V + + ED++ F+ +G + V + + GF +I++ N A +A M
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 63 NGTEMLGATLKV 74
NG ++ G ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.004
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 2 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 55
++ V++G L ++++E F K+GK+ + + L+ AF+ F N+++A
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNIRDA 347
Score = 25.8 bits (54), Expect = 2.9
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 4 GGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 62
G +R VY + + + E+LE +YG++ S+ N F+ + N+ A A + +
Sbjct: 497 GASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSS-GFVAYTNISNAMKAVNGL 555
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.5 bits (78), Expect = 0.004
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 7 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAED 57
RV+VG L KK ++ F+ G + V + L P G AF+ F N ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 58 ACSAMNGTEMLGATLKVEISR 78
A +NG + + V+ +R
Sbjct: 105 AIETLNGKTLDDREIVVQKAR 125
Score = 29.1 bits (62), Expect = 0.31
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNS-VWVALNPP----------------GFAFIEFE 50
+YV GL + E L+ FD Y + + V PP GF F+ F
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 51 NLQEAEDACSAMNGTEMLGATLKVE 75
N ++ A MNG ++ TL V+
Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.1 bits (77), Expect = 0.005
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 6 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 61
T VY+ L I +++ F ++G++ S+ + + P GF F+ + N + A+ A
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 62 MNGTEMLGATLKVEISRK 79
+N E G L V ++K
Sbjct: 321 LNDKEYKGKKLYVGRAQK 338
Score = 34.7 bits (76), Expect = 0.006
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 5 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACS 60
G +++ L + + E L+ EF +G + S + + G F F+ + +EA A +
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVT 422
Query: 61 AMNGTEMLGATLKVEISRK 79
MN + G L V ++++
Sbjct: 423 EMNQRMLAGKPLYVALAQR 441
Score = 31.1 bits (67), Expect = 0.077
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 62
+YVG L + + L F+ G + S+ V + G+A++ F N+++ E A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 63 NGTEMLGATLKVEISRK 79
N T + G ++ S++
Sbjct: 142 NYTLIKGRPCRIMWSQR 158
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 35.1 bits (77), Expect = 0.005
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 8 VYVGGLVEGIK----KEDLEREFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSA 61
+Y+ + E I+ K LE F YGK+ V L G AF+ F+NL+ A A
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKD 87
Query: 62 MNGTEMLGATLKVEISR 78
+ G + G + ++ S+
Sbjct: 88 LQGYPLYGKPMMIQYSK 104
Score = 31.1 bits (67), Expect = 0.077
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 17 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 76
+ + L + F+ + V + G AF+E+++ +EA A + G + G +KV
Sbjct: 185 VNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTF 244
Query: 77 SRK 79
+RK
Sbjct: 245 ARK 247
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.006
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSAM 62
VYVG + + E+L+ F G +N V + +P GFA+IEF +A +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 63 NGTEMLGATLKVEISR 78
NG+ + LKV R
Sbjct: 116 NGSMLHERPLKVTPKR 131
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.008
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 1 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 55
+S V+VG L ++DL F G + S+ + +P GF ++ F ++ A
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 56 EDACSAMNGTEMLGATLKVEIS 77
+ C MNG + G +++ S
Sbjct: 421 K-KCVEMNGHFIAGRPCRLDFS 441
Score = 33.5 bits (73), Expect = 0.014
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 62
V+VG L + + L +EF++YG + V ++ G+ +++FE EA A A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET-PEAAKAAVAA 323
Query: 63 NGT-EMLGATLKVEIS 77
NGT E+ G + +++S
Sbjct: 324 NGTKEIDGRMVNLDLS 339
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.9 bits (74), Expect = 0.011
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGT 65
+++ L I E++ F +YG + + + + G AF+ +EN+Q+A AC ++G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 66 EMLGATLKV 74
+ L V
Sbjct: 74 NFMDRYLVV 82
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.5 bits (73), Expect = 0.014
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 5 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSA 61
G +YV + + ++D+E F YG++ SV + GF ++ Q+AE+A SA
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSA 815
Query: 62 MNGTEMLGATLKVEISR 78
G ++ L V +S+
Sbjct: 816 A-GKQLGNRVLNVVLSK 831
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 33.1 bits (72), Expect = 0.019
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 62
+ V L + KE + F YG ++ +++ + G+ +IE+ +A +A M
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 63 NGTEMLGATLKVEISR 78
N E+ G L V I R
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 32.7 bits (71), Expect = 0.025
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 63
+YV L G + F YG + +W+ L+P A + +E+L A A A++
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESLSSAIVARDALH 56
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 32.3 bits (70), Expect = 0.033
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 6 TRVYVGGL-VEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 64
+R+++G L + + K +L + F YG L + + N + F++F ++ A +A G
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKAN---YGFVQFFTNEDCARALNAEQG 419
Query: 65 TEMLGATLKVEISR 78
+ G L +EIS+
Sbjct: 420 NFVRGQKLHLEISK 433
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 32.3 bits (70), Expect = 0.033
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 67
++VG L G+ + F YG ++S+ + L+ AF+ F++++ A+ +NG +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAKHVLEELNGKRI 647
Query: 68 LGATLKVEIS 77
+ V IS
Sbjct: 648 FFGSDPVCIS 657
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.9 bits (69), Expect = 0.044
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 17 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 64
+ +E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 174 LSQERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 31.5 bits (68), Expect = 0.058
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 19 KEDLEREFDKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 76
K+D+ E +K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 273 KDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.058
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 7 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 61
++Y+ L + ++ + +G L S + N GF F EF+N +AE A S
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 62 MNGTEMLGATLKVEIS 77
++G + G L + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 31.5 bits (68), Expect = 0.058
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 43 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 79
G AF F + +EA+ +NG E+ G L+VE R+
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQ 310
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.1 bits (67), Expect = 0.077
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 62
+YVG L G ++ + F ++G + + ++ N +AFIEFE+L A M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 63 NGTEMLGATLKVEI 76
+ + G L+ ++
Sbjct: 167 HNYLLYGKLLQCKV 180
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.13
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 20 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 74
EDLE F ++GK+ S V + +AFIEF+N + E A M + + + V
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Query: 75 EISR 78
+ S+
Sbjct: 318 DFSQ 321
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.13
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 3 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 57
+ G V+VG + + ++ + F++ G + + + L+P G+ F EF + +
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 58 ACSAMNGTEMLGATLKVE 75
A +N +E+ ++VE
Sbjct: 64 AVRKLNNSELGPRKIRVE 81
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 43 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 74
GF F EF + Q+ E AC +N ++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.9 bits (64), Expect = 0.18
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 62
VYVG L +E + F K G++ + + ++ P GF F+E+ Q+A D+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 63 NGTEM 67
+ T +
Sbjct: 94 SRTSL 98
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.24
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 63
+YVG L +L F G + +A P G F ++FEN +A + +N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 64 GTEMLGATLKV 74
G G L++
Sbjct: 342 GYRYGGRPLQL 352
Score = 28.3 bits (60), Expect = 0.54
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 7 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 61
RVYVG L ++ +L+ + G + + + LN P G A IE+ +EA A
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEI-LNLPNGLSKGCAIIEYSTAEEARTAIKT 125
Query: 62 MNGTEMLGATLKVEISRK 79
++ + +G + + R+
Sbjct: 126 LSNQKFMGRLVYIREDRE 143
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.5 bits (63), Expect = 0.24
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 63
V+VG L + + L F +G++ SV + +AF+EF+ ++A++A MN
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 64 GTEMLGATLKV 74
+ + ++V
Sbjct: 68 YSILCDRCIRV 78
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.31
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 43 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 79
G AF F +EA+ +NG E+ G L+VE R+
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQ 280
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.54
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 36
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 3 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAED 57
S +Y+G L + ++D+ F ++G+ + + + GFAF+++E+ +
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVL 87
Query: 58 ACSAMNGTEMLGATLKVE 75
A M ++L ++V+
Sbjct: 88 AVDNMTNVKLLDRLVRVD 105
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 43 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 79
G + FE Q+AEDA + T + G+ +++IS+K
Sbjct: 125 GSCDVYFETSQDAEDAQKTLQSTNLKGS--EIQISKK 159
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 2.2
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-FAFIEFENLQEAEDACSAMNGTE 66
+YVG L +E+L+ F + G F+EFEN+ A +A + G
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV- 486
Query: 67 MLGATLK 73
L +++K
Sbjct: 487 CLSSSIK 493
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 8 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 67
+++GG+ +++ L F+++G + S+ + N F++ AE A AM
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHN-YRHGFLKMFRRDAAEKAQVAMENVPF 466
Query: 68 LGATLKVE 75
T++ +
Sbjct: 467 ADTTIRTK 474
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 26 FDKYGKLNSVWVA---LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 75
F ++G L V V L P ++F++F+N +A A S T + G +++E
Sbjct: 103 FQQWGPLLHVKVLKDWLQRP-YSFVQFQNTDDASKALSEAQNTILDGRHIRIE 154
Score = 24.6 bits (51), Expect = 6.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 26 FDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 75
F KYGK+ + P FAF+ F++ Q A A + L+VE
Sbjct: 386 FSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVE 437
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 19 KEDLEREFDKYGKLNSVWVAL 39
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.0 bits (52), Expect = 5.1
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 5 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 59
G + V G+ +E +E F +G + ++ + L+ G+A IE+ L++A+ A
Sbjct: 9 GYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
Query: 60 SAMNGTEMLGATLKVEIS 77
N +L L+V+ +
Sbjct: 69 DEKN-LSLLDEKLEVDFA 85
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 8.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 20 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMN 63
ED+ EF KYG++ + V N G ++ F+ + A++A +N
Sbjct: 78 EDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 9 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 41
Y G LV+G +K +E D +LNS+ ++P
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSP 148
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.134 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 396,429
Number of Sequences: 5004
Number of extensions: 13142
Number of successful extensions: 87
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 60
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)
- SilkBase 1999-2023 -