GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005204-TA|BGIBMGA005204-PA|IPR009890|Etoposide-induced
2.4
         (249 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.1  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 102 WAWMQPFLLMTFRMIW 117
           W W+ PF ++    +W
Sbjct: 179 WFWVTPFTVLPLLKVW 194


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 102 WAWMQPFLLMTFRMIW 117
           W W+ PF ++    +W
Sbjct: 179 WFWVTPFTVLPLLKVW 194


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 24  NERALSRSPQTDADSKHKQKQPKVRQESKVLTRVLQSC 61
           NER   +  +T  +    +++ +  +E K+++ +  SC
Sbjct: 274 NEREYRKYRETSKERSRDRRERERSKEPKIISSLSNSC 311


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.330    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,778
Number of Sequences: 429
Number of extensions: 2634
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 249
length of database: 140,377
effective HSP length: 56
effective length of query: 193
effective length of database: 116,353
effective search space: 22456129
effective search space used: 22456129
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 43 (21.4 bits)