GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005203-TA|BGIBMGA005203-PA|IPR003439|ABC transporter
related, IPR013525|ABC-2 type transporter
         (530 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   8.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 256 VGLHLFLGIIVAML----FNKMGYDASKTLFNFGFCYACVIAMLYIPMMPVLLAF 306
           V  HL  GI+ ++L    + +   D    L NFG+   C+I ++ +  + + +AF
Sbjct: 365 VATHLVCGILGSILVPFFYVQEDDDVKLVLLNFGWQMICLIVVIALVSIIMYIAF 419


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 409 VYGIGSGDDPLPIVW 423
           V G+ +GD PL I W
Sbjct: 631 VCGVAAGDPPLTISW 645


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.141    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,017
Number of Sequences: 429
Number of extensions: 5998
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 2
length of query: 530
length of database: 140,377
effective HSP length: 61
effective length of query: 469
effective length of database: 114,208
effective search space: 53563552
effective search space used: 53563552
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)