GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005202-TA|BGIBMGA005202-PA|IPR003439|ABC transporter
related, IPR013525|ABC-2 type transporter
         (620 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    33   0.007
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   9.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   9.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 33.1 bits (72), Expect = 0.007
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 204 CGEYGNNTGKLVRAIDNGNNDIRNGMPFPDQTPDYNNKKDMEVSLRAGSNWDKNDLSQVQ 263
           CG Y N       A DN N D +N     +Q  D N   + +   R   N  +ND  Q  
Sbjct: 419 CGRYHNQNAGNQNA-DNQNADNQNAN---NQNAD-NQNANKQNGNRQNDN-RQNDNKQNG 472

Query: 264 EKFKDNNSNGANGHGNLQNGILQYATSEVSKGEPLSLQMDTDKQDN 309
            +  DN  NG   + N QNG  Q    +    +  + Q D  +  N
Sbjct: 473 NRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGN 518


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 268 DNNSNGANGHGN 279
           +NN+NGAN +GN
Sbjct: 248 NNNNNGANDNGN 259


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 527 VSFNAIPVYLRWITY 541
           V+FNA P Y   ITY
Sbjct: 190 VTFNAFPTYTHEITY 204


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 288 ATSEVSKGEPLSLQMDTDKQDNAAAALLGT 317
           ++S  S   P+S+Q+D       AAAL GT
Sbjct: 450 SSSSRSAESPMSVQVDPMAASVVAAALTGT 479


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 46  VEEAMGVATSLKL-PSSTTRDEKEMLTETILHTLSLMEHRKTMTSNLSGGQKKRLSIALE 104
           +EEA+ +   +++ P  T  + K   T   L+ + L          L G QK++ ++ L+
Sbjct: 153 IEEALKIREEIRVDPFRTGFEHKRQPTSIDLNAVRLC-----FQVFLEGSQKRKFNVPLQ 207

Query: 105 LVNNPPI 111
            V + PI
Sbjct: 208 PVVSDPI 214


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 46  VEEAMGVATSLKL-PSSTTRDEKEMLTETILHTLSLMEHRKTMTSNLSGGQKKRLSIALE 104
           +EEA+ +   +++ P  T  + K   T   L+ + L          L G QK++ ++ L+
Sbjct: 153 IEEALKIREEIRVDPFRTGFEHKRQPTSIDLNAVRLC-----FQVFLEGSQKRKFNVPLQ 207

Query: 105 LVNNPPI 111
            V + PI
Sbjct: 208 PVVSDPI 214


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,676
Number of Sequences: 429
Number of extensions: 8177
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 620
length of database: 140,377
effective HSP length: 62
effective length of query: 558
effective length of database: 113,779
effective search space: 63488682
effective search space used: 63488682
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)