GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005201-TA|BGIBMGA005201-PA|undefined
         (231 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.4  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    23   2.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 32  TPTQHKTLSHLPKRQPV----DLAFTDLTYKVQEGRKSNVKTILKSVSGRLRSGELTAIM 87
           +P   + L   P + PV    D+AF+DL   V+      V    +S+S  L++ E+  + 
Sbjct: 54  SPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVS 113

Query: 88  G 88
           G
Sbjct: 114 G 114


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 103 GYKRTDKHP 111
           G+K+TDKHP
Sbjct: 75  GFKKTDKHP 83


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 103 GYKRTDKHP 111
           G+K+TDKHP
Sbjct: 91  GFKKTDKHP 99


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 129 LFLVFLLCMSDFLGNSSICL 148
           + LV L CM D   NS ICL
Sbjct: 278 VLLVRLACMFDAQTNSMICL 297


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 31  ITPTQHKTLSHLPKRQPVDLAFTDLTYKVQEGRKSNVKTILKSV 74
           +TP     +S +P   P+DLA       +   RK   K IL+S+
Sbjct: 435 LTPPSSNPVSPVPSPDPLDLAIPVRETLILPPRK-RCKMILESM 477


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 64  KSNVKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 101
           K   K  L + S  ++   +  IMG    GK+TLL+ L
Sbjct: 128 KDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDAL 165


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,691
Number of Sequences: 429
Number of extensions: 3010
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 231
length of database: 140,377
effective HSP length: 56
effective length of query: 175
effective length of database: 116,353
effective search space: 20361775
effective search space used: 20361775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)