GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005200-TA|BGIBMGA005200-PA|IPR002259|Delayed-early
response protein/equilibrative nucleoside transporter
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    37   0.007
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    30   0.57 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   2.3  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    28   2.3  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    28   2.3  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   4.0  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    27   7.1  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   9.3  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 213 QIISLAFKISPQHSALIYFIIADVLVITSLISYIS-LYKIDFFTHHILQGSGMVTNRHRE 271
           Q++S+      + S L+  ++ +V++ T+L+  +S +   DFF + I+Q SG +  R R+
Sbjct: 221 QVLSIILPNYYETSPLVLSLVTEVIINTTLLPLVSYISDPDFFNYLIIQASGSIIQRRRK 280

Query: 272 V 272
           +
Sbjct: 281 I 281


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 259 LQGSGMVTNRHREVSMVNIMKKIWVYAFSIFAIFAISMAVYPAVTVLVESHPATKGTDWN 318
           L  SGMV     EV++  I      Y +++FA+F +   V+P V++       T    ++
Sbjct: 5   LSSSGMVLKELPEVALQKISSN---YYWAVFAVFLLCAIVFPLVSIFSLPQKQTYHRFFS 61

Query: 319 NIFFVPVVNYLIFNC 333
            +  V  + Y    C
Sbjct: 62  ILSLVSCLAYFTMAC 76


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/78 (21%), Positives = 36/78 (46%)

Query: 128  LKSRLQSSLIVVTISFLVTTALVQVNTDEWQNGFFIITMVTVVIMTAASAVFIGGLVGIA 187
            LKS L +S+  V   F+   A +  ++ +       I  +       ++A+F+  ++   
Sbjct: 1907 LKSILDNSVKTVNNGFIRVRAFLAGSSKKNDRDQLQIAFIVEDTREESNAIFLANMINSL 1966

Query: 188  SRFSKEYMAAVVSGQSLG 205
            +R   +Y+   +SG +LG
Sbjct: 1967 NRGCNDYLPMDLSGTALG 1984


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 235 DVLVITSLISYISLYKIDFFTHHILQGSGMVTNRHREVSMVNIMKKIWVYAFSIFAIFAI 294
           D ++ T+L+S I L K+      IL+      N  R+  ++NI  ++  YA    +++A 
Sbjct: 100 DSIICTNLVSAIKLSKMA-----ILEWFRN-KNSERDRLILNISSRLSTYALPGTSVYAA 153

Query: 295 SMAVYPAVTVLVESHPATKGTDWNNI 320
           S A   + T ++ +  A+KG   N I
Sbjct: 154 SKAGLESFTKVLAAEVASKGIRVNAI 179


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 152 VNTDEWQNGFFIITMVTVVIMTAASAVFIGGLVGIASRFSKEYMAAVVSGQSLGGIIAAV 211
           +NT +W  GF I+      I T +       L    S  S     A+V    +GG++  +
Sbjct: 257 INTTQWPTGFAILLSFNSPIWTMSGYDAPFHLSEECSNASVNAPKAIVMTAVIGGVVGWI 316

Query: 212 AQII 215
            QII
Sbjct: 317 MQII 320


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 113 LIFLILNSLYGHLVSLKSRLQSSLIVVTISFLVTTALVQVNTDEWQNGFFIITMV 167
           LI L+++    ++V L +R  S+L++ + SF+ TT      T+  +  FF +T++
Sbjct: 101 LISLLIDLSIWNIVPLNARW-SALLLYSSSFMATTFQTHTFTNSIETIFFFLTIL 154


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 99  EFTSYLNVATAIPNLIFLILNSLYGHLVSLKSRLQSSLIVVTISF--LVTTALVQVNTDE 156
           +   ++N    +  L FL++  LY   + L   + + + V ++    L      Q N   
Sbjct: 6   DLNHFINYFPLVLRLFFLVVFGLYSFTLILHLLVINRVDVFSLLHTPLPVNRSQQANAPL 65

Query: 157 WQNGFFIITMVTVVIMTAASAVFIGG 182
           WQ  F +  + T++ + A S   I G
Sbjct: 66  WQLSFSLSILGTLLFVIAESLYLISG 91


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 152 VNTDEWQNGF--FIITMVTVV--IMTAASAVFIGGLVGIAS 188
           +N   W + +  +I+  V+V+  ++T AS+V+  G++ IAS
Sbjct: 95  LNPRNWSHSYKWWIVIQVSVITIVVTFASSVYSSGIIDIAS 135


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,486
Number of Sequences: 5004
Number of extensions: 71507
Number of successful extensions: 262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 8
length of query: 449
length of database: 2,362,478
effective HSP length: 75
effective length of query: 374
effective length of database: 1,987,178
effective search space: 743204572
effective search space used: 743204572
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)