GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005199-TA|BGIBMGA005199-PA|IPR001190|Speract/scavenger
receptor, IPR011050|Virulence factor, pectin lyase fold,
IPR000859|CUB, IPR002345|Lipocalin, IPR006626|Parallel beta-helix
repeat
         (2846 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    27   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   5.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   6.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   6.7  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 1074 SIPSEIQNSVTIKVAVSALSRPQQREIAGWFNLDV 1108
            ++ + ++ SV IK+   A +R +  EIAG FNL V
Sbjct: 273  NLGTTVRASVHIKLPKLAANRAKLEEIAGKFNLQV 307


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 2692 DDNLEFKRDPDKEGKMYGPYGAP--NYGGQ 2719
            DD      + D+ G  YG YGAP  +YG +
Sbjct: 1808 DDPANCAPEEDQYGSQYGQYGAPYDHYGSR 1837


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/70 (24%), Positives = 28/70 (40%)

Query: 1388 YMYNNTWRNNQNFGLVIDGHFAEVNLTKNIFTDNNCKYGLISIRGMEKKMMVDGNLIERN 1447
            Y +  T  +    G   +G F   + T  I    + K+  I       KMMV   L +R 
Sbjct: 228  YHFGMTDNSRLEPGTNKNGKFFSRSSTSRIVISESLKHFTIQSSVTTSKMMVSPRLYDRQ 287

Query: 1448 NGQFMVQFHM 1457
            NG  + + ++
Sbjct: 288  NGLVLSRMNL 297


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 28  PDIRLVDGPSILVGRVQLLHRGQWRSVCTNSRN 60
           P+IR+ +  S+ + +VQL+H G +   C   RN
Sbjct: 357 PEIRVFNDGSLYLTKVQLIHAGNY--TCHAVRN 387


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 887,668
Number of Sequences: 429
Number of extensions: 43609
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 7
length of query: 2846
length of database: 140,377
effective HSP length: 70
effective length of query: 2776
effective length of database: 110,347
effective search space: 306323272
effective search space used: 306323272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)