GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005198-TA|BGIBMGA005198-PA|undefined
         (118 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107761-1|AAI07762.1|  372|Homo sapiens USP34 protein protein.        28   6.5  
BC062325-1|AAH62325.1|  424|Homo sapiens USP34 protein protein.        28   6.5  
BC022783-1|AAH22783.1|  986|Homo sapiens USP34 protein protein.        28   6.5  
AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific prot...    28   6.5  
AB018272-1|BAA34449.1| 1196|Homo sapiens KIAA0729 protein protein.     28   6.5  
AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein.     28   6.5  

>BC107761-1|AAI07762.1|  372|Homo sapiens USP34 protein protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1   MKCSKETSVQKKHSQFSDTKYKWRTVIVILCCFIECKGQELSATDP 46
           + CSK++++ ++ S+F  T      V+  L     C GQ L + DP
Sbjct: 279 LHCSKDSTLAEEESEFPSTSIS--AVLSDLADLRSCDGQALPSQDP 322


>BC062325-1|AAH62325.1|  424|Homo sapiens USP34 protein protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1   MKCSKETSVQKKHSQFSDTKYKWRTVIVILCCFIECKGQELSATDP 46
           + CSK++++ ++ S+F  T      V+  L     C GQ L + DP
Sbjct: 331 LHCSKDSTLAEEESEFPSTSIS--AVLSDLADLRSCDGQALPSQDP 374


>BC022783-1|AAH22783.1|  986|Homo sapiens USP34 protein protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1   MKCSKETSVQKKHSQFSDTKYKWRTVIVILCCFIECKGQELSATDP 46
           + CSK++++ ++ S+F  T      V+  L     C GQ L + DP
Sbjct: 893 LHCSKDSTLAEEESEFPSTSIS--AVLSDLADLRSCDGQALPSQDP 936


>AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific
            proteinase 34 protein.
          Length = 3395

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1    MKCSKETSVQKKHSQFSDTKYKWRTVIVILCCFIECKGQELSATDP 46
            + CSK++++ ++ S+F  T      V+  L     C GQ L + DP
Sbjct: 3302 LHCSKDSTLAEEESEFPSTSIS--AVLSDLADLRSCDGQALPSQDP 3345


>AB018272-1|BAA34449.1| 1196|Homo sapiens KIAA0729 protein protein.
          Length = 1196

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1    MKCSKETSVQKKHSQFSDTKYKWRTVIVILCCFIECKGQELSATDP 46
            + CSK++++ ++ S+F  T      V+  L     C GQ L + DP
Sbjct: 1103 LHCSKDSTLAEEESEFPSTSIS--AVLSDLADLRSCDGQALPSQDP 1146


>AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein.
          Length = 3412

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1    MKCSKETSVQKKHSQFSDTKYKWRTVIVILCCFIECKGQELSATDP 46
            + CSK++++ ++ S+F  T      V+  L     C GQ L + DP
Sbjct: 3319 LHCSKDSTLAEEESEFPSTSIS--AVLSDLADLRSCDGQALPSQDP 3362


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,540
Number of Sequences: 224733
Number of extensions: 524982
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 6
length of query: 118
length of database: 73,234,838
effective HSP length: 80
effective length of query: 38
effective length of database: 55,256,198
effective search space: 2099735524
effective search space used: 2099735524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)