GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005198-TA|BGIBMGA005198-PA|undefined
         (118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   2.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   2.8  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           20   6.6  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           20   6.6  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 92  VIEPGVEVRFAPMIGITVRGKLI 114
           V++PG+ V FAP  G+T   K +
Sbjct: 214 VLKPGMVVTFAP-AGLTTEVKSV 235


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 92  VIEPGVEVRFAPMIGITVRGKLI 114
           V++PG+ V FAP  G+T   K +
Sbjct: 271 VLKPGMVVTFAP-AGLTTEVKSV 292


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 41 LSATDPYLVNKSTGLTE 57
          +S++D   ++++TGLTE
Sbjct: 10 ISSSDDNRIDQATGLTE 26


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 41 LSATDPYLVNKSTGLTE 57
          +S++D   ++++TGLTE
Sbjct: 10 ISSSDDNRIDQATGLTE 26


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,382
Number of Sequences: 429
Number of extensions: 1085
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 118
length of database: 140,377
effective HSP length: 51
effective length of query: 67
effective length of database: 118,498
effective search space:  7939366
effective search space used:  7939366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)