GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005197-TA|BGIBMGA005197-PA|undefined
         (643 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.48 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.83 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   2.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   4.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.48
 Identities = 13/59 (22%), Positives = 19/59 (32%)

Query: 336 HNNGQTNANANXXXXXXXXXXXXXXXDHDHVLEHSLHQLLRAVHHANTHHPFPHPATGP 394
           H  G  +++ +                H   L HS +     + H   HHP P    GP
Sbjct: 417 HTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGP 475



 Score = 23.8 bits (49), Expect = 4.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 363 HDHVLEHSLHQLLRAVHHANTHHPFPH 389
           H H + H    +    HH ++H   PH
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPH 441


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.83
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 479 GYDAVCRTSLVVHVGEKTLKC-ICRD 503
           GY+ V +   V H GEK  KC +C +
Sbjct: 242 GYNHVLKLHQVAHYGEKVYKCTLCHE 267


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 474 NIMAHGYDAVCRTSLVVHVGEKTLKCICRDGKVRHLSYE 512
           NI+  G DA+     +       +K +CRD     L Y+
Sbjct: 575 NIILKGIDAIEFPRSITRNATALIKKLCRDNPAERLGYQ 613


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 597 FFSSELVQDKKWENLGGAFKEIKLDKMEGKNFLNK 631
           F   + V++    NL   F E KLD +  K F NK
Sbjct: 17  FTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNK 51


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,941
Number of Sequences: 429
Number of extensions: 6304
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 643
length of database: 140,377
effective HSP length: 62
effective length of query: 581
effective length of database: 113,779
effective search space: 66105599
effective search space used: 66105599
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)