GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005194-TA|BGIBMGA005194-PA|undefined
         (117 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   6.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   6.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            20   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 23  KNAPAKPAEEKDETASNNGEKKEVKEVNGAEVVKPPSAGVN 63
           K +PA P   K    +    KKEV+++   ++    S G+N
Sbjct: 273 KLSPATPKGSKCSMITTPEIKKEVEDMEYDDIKTELSTGMN 313


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 26  PAKPAEEKDETASNNGEKKEVKE 48
           P +  ++KD+  S+N   K  KE
Sbjct: 81  PKEETDDKDDDESDNENIKSQKE 103


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 62  VNIRDVAGKILTLAQKGE 79
           V  +D AGK+   A+K +
Sbjct: 441 VTFKDAAGKVTKAAEKAQ 458


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 76  QKGEWPAVEQTLKVLEKLVAAGGEDA 101
           Q  EWP    TLK   ++  A  +DA
Sbjct: 70  QVHEWPVGNDTLKSKMEIDPATQKDA 95


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 25 APAKPAEEKDETASNNGEK 43
          AP  PAEE +  A   GE+
Sbjct: 50 APNMPAEEGEGMAGVTGEE 68


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.303    0.124    0.335 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,066
Number of Sequences: 429
Number of extensions: 1009
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 117
length of database: 140,377
effective HSP length: 51
effective length of query: 66
effective length of database: 118,498
effective search space:  7820868
effective search space used:  7820868
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.1 bits)
S2: 39 (19.8 bits)