GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005192-TA|BGIBMGA005192-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
         (237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    59   6e-10
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    28   1.4  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    27   3.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.2  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   4.2  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    26   5.5  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   9.7  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   9.7  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   9.7  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 3   GVYNKRRVLGVNSVNAMRANQLFSAMTGTDPAARTTPVVCGTGRCTRVPVFSAGKAGNVP 62
           GV+  + + GV +++++RA++  S +T         PVV G    T VP+ S G    + 
Sbjct: 164 GVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGHSGATIVPLLSQGGV-ELT 222

Query: 63  RSQVECLTRLIREADDIICKVKSNNGQGHLSIGFSTARFVVNIMKGL-----FQKPTFID 117
             + + L   I+   D + K K+  G   LS+ ++ AR   ++++ L      ++ TF++
Sbjct: 223 GEKRDALIHRIQFGGDEVVKAKAGAGSATLSMAYAGARMASSVLRALAGESGVEECTFVE 282

Query: 118 SALVEQRDPGKCYNMAVCATPVTIGKGGI-VEYVVPQLNEAETKLLEDSKCDLEDMLNLG 176
           S L   +D G    +   A+ VT+GK G+   + V ++N+ E  LL+ +  +L+  +  G
Sbjct: 283 SPL--YKDQG----IDFFASRVTLGKDGVDTIHPVGKINDYEESLLKVALGELKKSITKG 336


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 87  NGQGHLSIGFSTARFVVNIMKGLFQKP 113
           NG  +  IGF   RFV+N+ K L   P
Sbjct: 95  NGGAYQGIGFHYGRFVMNLRKALTSTP 121


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 90  GHLSIGFSTARFVVNIMKGLFQKPTFIDSALVEQRDPGK-CYNMAVCATPVTIGKGGIVE 148
           G  S+G     F  +  KGLF   +   S LVE+RD  +  Y   + A  +  G+     
Sbjct: 143 GGASVGGMAPMFSYSKTKGLFAGVSLEGSVLVERRDANRSLYRGDITAKRLLSGQVAQPA 202

Query: 149 YVVPQLNEAETKLLEDSKCDLEDMLNLGRCYA 180
              P      +K+   ++ D  D+ N    YA
Sbjct: 203 AADPLYRVLNSKIFNLNRGDEGDIYNDVPIYA 234


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 139 VTIGKGGIVEYVVPQLNEAETKLLEDSKCDLEDMLNLGRCYAVGD 183
           +T  + GI E+ +  L +A   L++DS    ED  N      VG+
Sbjct: 770 ITRCEEGITEFTIVSLKQATISLIKDSNMGHEDANNFLHFSIVGN 814


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 177 RCYAVGDEY--CIHSCKCPAPPSCKTSRNNLILSSVAKSIFVKVTWNC---NL--VTRRK 229
           R + + +EY  CI + +  A  +C     NL++   + S  +  +WN    NL  ++R  
Sbjct: 81  RLWQLEEEYFTCIKTIELEATVNCLCVNENLVVCGCSNSSCIVYSWNAEQRNLTEISRFT 140

Query: 230 VATLVPL 236
            + ++PL
Sbjct: 141 CSEIIPL 147


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 77  DDIICKVKSNNGQGHLSIGFSTARFVVNIMK-GLFQKPTFIDSALVEQRDPG 127
           DD+I  V +  G  +L +G++T      + K G+  K T   + +     PG
Sbjct: 265 DDVILLVNNMGGMSNLELGYATEVVSEQLAKRGIIPKRTMSGTFVTALNGPG 316


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 154 LNEAETKLLEDSKCDLEDMLNL 175
           + +   K L+D+KC+ ED  NL
Sbjct: 465 IRDIAIKFLDDAKCETEDSTNL 486


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 141 IGKGGIVEYVVPQLNEAETKLLEDS-KCDLEDMLN 174
           I   G V+ ++P L + E KL +DS +  LE+ +N
Sbjct: 260 IKSAGTVKDIIPLLVQKENKLFDDSDQSVLEETIN 294


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 32  DPAARTTPVVCGTGRCTRVPVFSAGKAGNVPRSQVECLTRLIREADDI 79
           +P A+ TP V  T    R+ V+++     V     + L+ ++RE  DI
Sbjct: 160 EPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSLSEMLRELKDI 207


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 149 YVVPQLNEAETKLLEDSKCDLEDMLNLGRCYAVGDEYC 186
           ++VP L +  T  +   K  + D++ L       +EYC
Sbjct: 72  FIVPWLRKHGTNPINGQKASMSDLIKLKFAKNSAEEYC 109


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,038,223
Number of Sequences: 5004
Number of extensions: 40643
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 10
length of query: 237
length of database: 2,362,478
effective HSP length: 71
effective length of query: 166
effective length of database: 2,007,194
effective search space: 333194204
effective search space used: 333194204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)