GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005192-TA|BGIBMGA005192-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
         (237 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.5  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 136 ATPVTIGKGGIVEYVVPQLNEAETKL-LEDSKCD 168
           A   T GKGG+V   V  ++ A T + + D K D
Sbjct: 176 AVNATTGKGGLVSLAVQAIDLANTLVYMADHKGD 209


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 37  TTPVVCGTGRCTRVPVFSAGKAGNVPRSQVECLTRLIRE 75
           T  V C        P  ++ K+G V   Q  C+ R+ RE
Sbjct: 263 TNSVTCDRPSDEAEPSSTSKKSGIVRSHQQSCINRVARE 301


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 164 DSKCDLEDMLNLGRCYAVGDEYCIHSCKC 192
           +S C L   +   + Y  G++ C H   C
Sbjct: 584 ESVCSLPCEVGQAKKYVAGEQCCWHCFNC 612


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 154 LNEAETKLLEDSKCDLEDMLNL 175
           LN    K+ ED KC +E + ++
Sbjct: 390 LNIPSVKIDEDQKCSIESITSV 411


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,611
Number of Sequences: 429
Number of extensions: 2758
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 237
length of database: 140,377
effective HSP length: 56
effective length of query: 181
effective length of database: 116,353
effective search space: 21059893
effective search space used: 21059893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)