GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005191-TA|BGIBMGA005191-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    42   3e-05
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   0.81 
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    23   9.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    23   9.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    23   9.9  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 41.9 bits (94), Expect = 3e-05
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 51  KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAF 108
           KVA++GAG  IG+  ++ LK    V  LAL+D    R   G+A D+ HI+T++ +  +
Sbjct: 30  KVAVLGAGGGIGQPLSMLLKLNDKVSELALFD---IRGAPGVAADIGHINTTSNVVGY 84


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 0.81
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 43  PVPRFPPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPE 86
           P PR P Q + +VG    IG+  AL +   K+   L  YD+ P+
Sbjct: 98  PTPR-PGQVLGLVGTNG-IGKSTALKILSGKMKPNLGRYDNPPD 139


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 52  VAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQGR 111
           + I     ++ R   L     + +K  A+ D V  R++LG+  +   + T  E +   G 
Sbjct: 68  LGIFSQAKNVDRRNFLRTDYNEYIKEFAVNDTVDVRFILGLPENEQELATIREEQRTYGD 127

Query: 112 VFLKP 116
           + + P
Sbjct: 128 LAVLP 132


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 3    RQISLQVANKTPVLVPRAGYKNFVMSE 29
            R++    +NK  + +PRAG +N + +E
Sbjct: 1508 RKVKGSPSNKLTMDMPRAGLRNVIFTE 1534


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 23   KNFVMSEALAQIEKDCERFCPVPR 46
            ++F+  EA+  + ++ E+FC VPR
Sbjct: 1019 ESFLAIEAVHLLIENFEKFCEVPR 1042


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,813
Number of Sequences: 5004
Number of extensions: 17667
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 2,362,478
effective HSP length: 65
effective length of query: 55
effective length of database: 2,037,218
effective search space: 112046990
effective search space used: 112046990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)