Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005191-TA|BGIBMGA005191-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
(120 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 46 6e-06
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 46 8e-06
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 44 3e-05
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 44 3e-05
01_06_1220 + 35493575-35494765 42 1e-04
08_02_0774 - 21047696-21048889 42 1e-04
07_03_1371 - 26100553-26101767 42 2e-04
06_03_0865 - 25516072-25517007 29 0.76
02_05_0795 - 31792231-31794780 28 1.8
05_01_0064 + 454786-455646,456537-456752 26 7.1
12_01_0785 - 7171224-7171485,7172867-7173310,7175134-7175597 26 9.4
04_04_1538 + 34239913-34241274,34241468-34241578 26 9.4
01_07_0339 + 42848065-42848943,42849308-42849526 26 9.4
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 46.4 bits (105), Expect = 6e-06
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 48 PPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEA 107
P +KVAI+GA IG+ +L +K +V +L+LYD G+A D++HI+ +++
Sbjct: 26 PERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAG---TPGVAADVSHINAPAQVKG 82
Query: 108 FQGRVFLKPAL 118
F G L AL
Sbjct: 83 FMGDDQLGEAL 93
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 46.0 bits (104), Expect = 8e-06
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 48 PPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEA 107
P KVAI+GA IG+ AL +K +V L LYD V G+ D++H++T +
Sbjct: 56 PGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVV---NTPGVTADISHMNTGAVVRG 112
Query: 108 FQGRVFLKPAL 118
F G+ L+ AL
Sbjct: 113 FLGQPQLENAL 123
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 44.4 bits (100), Expect = 3e-05
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 48 PPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEA 107
P KVA++GA IG+ +L +K +V L LYD V G+ D++H+DT+ +
Sbjct: 41 PGFKVAVLGAAGGIGQPLSLLMKLNPLVSVLHLYDVV---NTPGVTADVSHMDTTAVVRG 97
Query: 108 FQGRVFLKPAL 118
F G L+ AL
Sbjct: 98 FLGPNQLEAAL 108
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 44.0 bits (99), Expect = 3e-05
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 50 QKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQ 109
+KVAI+GA IG+ AL +K +V +L+LYD G+A D++HI++ ++ F
Sbjct: 27 RKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAG---TPGVAADVSHINSPALVKGFV 83
Query: 110 GRVFLKPAL 118
G L AL
Sbjct: 84 GEEQLGEAL 92
>01_06_1220 + 35493575-35494765
Length = 396
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 51 KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQG 110
KVA++GA IG+ L +K +V L LYD V G+A DL+H +T +++ F G
Sbjct: 77 KVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIA---NVKGVAADLSHCNTPSQVLDFTG 133
>08_02_0774 - 21047696-21048889
Length = 397
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 51 KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQG 110
KVA++GA IG+ L +K +V L LYD V G+A DL+H +T +++ F G
Sbjct: 77 KVAVLGAAGGIGQPLGLLIKMSPLVSELHLYDIA---NVKGVAADLSHCNTPSQVLDFTG 133
>07_03_1371 - 26100553-26101767
Length = 404
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 51 KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQG 110
KVAI+GA IG+ +L +K +V L LYD V G+ DL H +T ++ F G
Sbjct: 79 KVAILGAAGGIGQPLSLLVKMSPLVSALHLYDIA---NVDGVTADLGHCNTPAKVAGFTG 135
Query: 111 R 111
+
Sbjct: 136 K 136
>06_03_0865 - 25516072-25517007
Length = 311
Score = 29.5 bits (63), Expect = 0.76
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 7 LQVANKTPVLVPRAGYKNFVMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSD 60
L VA T A V+++A +E+ C+RF P P P G+GSD
Sbjct: 116 LAVATTTTTTTTGAAAAPGVVADAAELVERPCKRFSPTPDSPSGS----GSGSD 165
>02_05_0795 - 31792231-31794780
Length = 849
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 42 CPVPRFPPQKVAIVGAG 58
CP P PP V IVGAG
Sbjct: 263 CPPPSLPPPSVLIVGAG 279
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 75 VKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQGRVF 113
V T++ Y+DVP + LAH S IEA GR F
Sbjct: 245 VVTISGYEDVPANDEQALVKALAHQPVSVAIEA-SGRHF 282
>12_01_0785 - 7171224-7171485,7172867-7173310,7175134-7175597
Length = 389
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 43 PVPRFPPQKVAIVGAGSDIGRIAALFLKQQKVVK 76
P P PP+ V + GA D A L +++V++
Sbjct: 10 PTPPPPPRPVLLAGASGDAKLCRAAALSREEVIR 43
>04_04_1538 + 34239913-34241274,34241468-34241578
Length = 490
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 70 KQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQGRVF 113
K+ + V ++ ++DVPE L + +AH S I+A GR F
Sbjct: 257 KRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDA-GGREF 299
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 77 TLALYDDVPERYVLGIANDLAHIDTSTEIEAFQGRVF 113
T++ Y+DVP + LAH S IEA GR F
Sbjct: 253 TISGYEDVPRNNEQALLKALAHQPVSVAIEA-SGRNF 288
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.139 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,272
Number of Sequences: 37544
Number of extensions: 127190
Number of successful extensions: 268
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 13
length of query: 120
length of database: 14,793,348
effective HSP length: 73
effective length of query: 47
effective length of database: 12,052,636
effective search space: 566473892
effective search space used: 566473892
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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