Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005191-TA|BGIBMGA005191-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
(120 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ402957-1|ABD77290.1| 305|Homo sapiens mitochondrial malate de... 46 4e-05
CR536548-1|CAG38785.1| 338|Homo sapiens MDH2 protein. 46 4e-05
BC001917-1|AAH01917.1| 338|Homo sapiens malate dehydrogenase 2,... 46 4e-05
AF047470-1|AAC03787.1| 338|Homo sapiens malate dehydrogenase pr... 46 4e-05
AC005077-1|AAS07425.1| 316|Homo sapiens unknown protein. 46 4e-05
BC051891-1|AAH51891.1| 505|Homo sapiens prenylcysteine oxidase ... 31 1.3
BC033815-1|AAH33815.1| 505|Homo sapiens prenylcysteine oxidase ... 31 1.3
AY359063-1|AAQ89422.1| 505|Homo sapiens PCL1 protein. 31 1.3
AF181490-1|AAF16937.1| 505|Homo sapiens prenylcysteine lyase pr... 31 1.3
AC016700-4|AAX93194.1| 106|Homo sapiens unknown protein. 31 1.3
AB020715-1|BAA74931.1| 506|Homo sapiens KIAA0908 protein protein. 31 1.3
X76388-1|CAA53972.1| 599|Homo sapiens RNase L inhibitor protein. 29 3.8
BC055288-1|AAH55288.1| 575|Homo sapiens PACS1 protein protein. 28 6.7
BC052577-1|AAH52577.1| 963|Homo sapiens phosphofurin acidic clu... 28 6.7
BC010096-1|AAH10096.1| 963|Homo sapiens phosphofurin acidic clu... 28 6.7
BC009936-1|AAH09936.1| 366|Homo sapiens PACS1 protein protein. 28 6.7
AY320283-1|AAQ67682.1| 963|Homo sapiens endosome-TGN sorting co... 28 6.7
AK096644-1|BAC04831.1| 829|Homo sapiens protein ( Homo sapiens ... 28 6.7
AK056361-1|BAB71164.1| 750|Homo sapiens protein ( Homo sapiens ... 28 6.7
AB033001-1|BAA86489.1| 641|Homo sapiens KIAA1175 protein protein. 28 6.7
>DQ402957-1|ABD77290.1| 305|Homo sapiens mitochondrial malate
dehydrogenase 2, NAD protein.
Length = 305
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 51 KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQG 110
KVA++GA IG+ +L LK +V L LYD + G+A DL+HI+T ++ + G
Sbjct: 5 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA---HTPGVAADLSHIETKAAVKGYLG 61
>CR536548-1|CAG38785.1| 338|Homo sapiens MDH2 protein.
Length = 338
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 51 KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQG 110
KVA++GA IG+ +L LK +V L LYD + G+A DL+HI+T ++ + G
Sbjct: 26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA---HTPGVAADLSHIETKAAVKGYLG 82
>BC001917-1|AAH01917.1| 338|Homo sapiens malate dehydrogenase 2,
NAD (mitochondrial) protein.
Length = 338
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 51 KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQG 110
KVA++GA IG+ +L LK +V L LYD + G+A DL+HI+T ++ + G
Sbjct: 26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA---HTPGVAADLSHIETKAAVKGYLG 82
>AF047470-1|AAC03787.1| 338|Homo sapiens malate dehydrogenase
precursor protein.
Length = 338
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 51 KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQG 110
KVA++GA IG+ +L LK +V L LYD + G+A DL+HI+T ++ + G
Sbjct: 26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA---HTPGVAADLSHIETKAAVKGYLG 82
>AC005077-1|AAS07425.1| 316|Homo sapiens unknown protein.
Length = 316
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 51 KVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLGIANDLAHIDTSTEIEAFQG 110
KVA++GA IG+ +L LK +V L LYD + G+A DL+HI+T ++ + G
Sbjct: 4 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA---HTPGVAADLSHIETKAAVKGYLG 60
>BC051891-1|AAH51891.1| 505|Homo sapiens prenylcysteine oxidase 1
protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 46 RFPPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLG 91
R PP K+AI+GAG IG +A + +QK K + + D+ ER +G
Sbjct: 31 RAPPDKIAIIGAG--IGGTSAAYYLRQKFGKDVKI--DLFEREEVG 72
>BC033815-1|AAH33815.1| 505|Homo sapiens prenylcysteine oxidase 1
protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 46 RFPPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLG 91
R PP K+AI+GAG IG +A + +QK K + + D+ ER +G
Sbjct: 31 RAPPDKIAIIGAG--IGGTSAAYYLRQKFGKDVKI--DLFEREEVG 72
>AY359063-1|AAQ89422.1| 505|Homo sapiens PCL1 protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 46 RFPPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLG 91
R PP K+AI+GAG IG +A + +QK K + + D+ ER +G
Sbjct: 31 RAPPDKIAIIGAG--IGGTSAAYYLRQKFGKDVKI--DLFEREEVG 72
>AF181490-1|AAF16937.1| 505|Homo sapiens prenylcysteine lyase
protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 46 RFPPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLG 91
R PP K+AI+GAG IG +A + +QK K + + D+ ER +G
Sbjct: 31 RAPPDKIAIIGAG--IGGTSAAYYLRQKFGKDVKI--DLFEREEVG 72
>AC016700-4|AAX93194.1| 106|Homo sapiens unknown protein.
Length = 106
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 46 RFPPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLG 91
R PP K+AI+GAG IG +A + +QK K + + D+ ER +G
Sbjct: 31 RAPPDKIAIIGAG--IGGTSAAYYLRQKFGKDVKI--DLFEREEVG 72
>AB020715-1|BAA74931.1| 506|Homo sapiens KIAA0908 protein
protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 46 RFPPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPERYVLG 91
R PP K+AI+GAG IG +A + +QK K + + D+ ER +G
Sbjct: 32 RAPPDKIAIIGAG--IGGTSAAYYLRQKFGKDVKI--DLFEREEVG 73
>X76388-1|CAA53972.1| 599|Homo sapiens RNase L inhibitor protein.
Length = 599
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 43 PVPRFPPQKVAIVGAGSDIGRIAALFLKQQKVVKTLALYDDVPE 86
P+PR P + + +VG IG+ AAL + K L YDD P+
Sbjct: 98 PIPR-PGEVLGLVGTNG-IGKSAALKILAGKQKPNLGKYDDPPD 139
>BC055288-1|AAH55288.1| 575|Homo sapiens PACS1 protein protein.
Length = 575
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 26 VMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSDIGRIAALFLK 70
V+S L +I++ C +PR P KVA VG S + I F+K
Sbjct: 214 VLSALLTRIQRYCNCNSSMPR--PVKVAAVGGQSYLSSILRFFVK 256
>BC052577-1|AAH52577.1| 963|Homo sapiens phosphofurin acidic
cluster sorting protein 1 protein.
Length = 963
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 26 VMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSDIGRIAALFLK 70
V+S L +I++ C +PR P KVA VG S + I F+K
Sbjct: 602 VLSALLTRIQRYCNCNSSMPR--PVKVAAVGGQSYLSSILRFFVK 644
>BC010096-1|AAH10096.1| 963|Homo sapiens phosphofurin acidic
cluster sorting protein 1 protein.
Length = 963
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 26 VMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSDIGRIAALFLK 70
V+S L +I++ C +PR P KVA VG S + I F+K
Sbjct: 602 VLSALLTRIQRYCNCNSSMPR--PVKVAAVGGQSYLSSILRFFVK 644
>BC009936-1|AAH09936.1| 366|Homo sapiens PACS1 protein protein.
Length = 366
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 26 VMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSDIGRIAALFLK 70
V+S L +I++ C +PR P KVA VG S + I F+K
Sbjct: 5 VLSALLTRIQRYCNCNSSMPR--PVKVAAVGGQSYLSSILRFFVK 47
>AY320283-1|AAQ67682.1| 963|Homo sapiens endosome-TGN sorting
connector protein.
Length = 963
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 26 VMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSDIGRIAALFLK 70
V+S L +I++ C +PR P KVA VG S + I F+K
Sbjct: 602 VLSALLTRIQRYCNCNSSMPR--PVKVAAVGGQSYLSSILRFFVK 644
>AK096644-1|BAC04831.1| 829|Homo sapiens protein ( Homo sapiens
cDNA FLJ39325 fis, clone OCBBF2015334, highly similar to
Rattus norvegicus cytosolic sorting protein PACS-1a
(PACS-1) ).
Length = 829
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 26 VMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSDIGRIAALFLK 70
V+S L +I++ C +PR P KVA VG S + I F+K
Sbjct: 552 VLSALLTRIQRYCNCNSSMPR--PVKVAAVGGQSYLSSILRFFVK 594
>AK056361-1|BAB71164.1| 750|Homo sapiens protein ( Homo sapiens
cDNA FLJ31799 fis, clone NT2RI2009037, highly similar to
Rattus norvegicus cytosolic sorting protein PACS-1a
(PACS-1) ).
Length = 750
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 26 VMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSDIGRIAALFLK 70
V+S L +I++ C +PR P KVA VG S + I F+K
Sbjct: 473 VLSALLTRIQRYCNCNSSMPR--PVKVAAVGGQSYLSSILRFFVK 515
>AB033001-1|BAA86489.1| 641|Homo sapiens KIAA1175 protein protein.
Length = 641
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 26 VMSEALAQIEKDCERFCPVPRFPPQKVAIVGAGSDIGRIAALFLK 70
V+S L +I++ C +PR P KVA VG S + I F+K
Sbjct: 280 VLSALLTRIQRYCNCNSSMPR--PVKVAAVGGQSYLSSILRFFVK 322
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.324 0.139 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,622
Number of Sequences: 224733
Number of extensions: 566598
Number of successful extensions: 911
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 21
length of query: 120
length of database: 73,234,838
effective HSP length: 81
effective length of query: 39
effective length of database: 55,031,465
effective search space: 2146227135
effective search space used: 2146227135
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)
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