GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005191-TA|BGIBMGA005191-PA|IPR001236|Lactate/malate
dehydrogenase, IPR010097|Malate dehydrogenase, NAD-dependent,
eukaryotes and gamma proteobacteria
         (120 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   3.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   3.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   8.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 28 SEALAQIEKDCERFCP 43
          +E  ++ +  C+RFCP
Sbjct: 40 NEIFSRCDGRCQRFCP 55


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 28 SEALAQIEKDCERFCP 43
          +E  ++ +  C+RFCP
Sbjct: 40 NEIFSRCDGRCQRFCP 55


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 104 EIEAFQGRVFLKPALYV 120
           E+E F GR+F  P  +V
Sbjct: 301 ELEDFDGRLFEFPIKFV 317


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,263
Number of Sequences: 429
Number of extensions: 1186
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 140,377
effective HSP length: 51
effective length of query: 69
effective length of database: 118,498
effective search space:  8176362
effective search space used:  8176362
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)