Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005189-TA|BGIBMGA005189-PA|undefined
(82 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 29 0.081
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 0.43
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 24 3.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 24 3.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 24 3.0
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 23 5.3
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 23 5.3
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 23 5.3
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 22 9.3
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 22 9.3
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 29.1 bits (62), Expect = 0.081
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 27 FIKWDEDSGTGLPVTLRVDPNGFYLYWTDQNMEVELLDIVTIRDVRTGVHAK 78
F+K E SGTG+ T + + W D ELL I TI D + +H +
Sbjct: 393 FLKGLESSGTGISFTHVIFSTN--VTWKDAGYNPELLSINTITDNKPVLHVQ 442
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 0.43
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 32 EDSGTGLPVTLRVDPNGFYLYWTDQNMEVELLDIVTI 68
ED+ G VT+ + PNG + T++N E +D+VT+
Sbjct: 572 EDNCFGEVVTIDLKPNGRNIEVTEENKR-EYVDLVTV 607
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 23.8 bits (49), Expect = 3.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 6 RSAKVSLKSIEVPKALQD 23
R++K ++S+EV KALQD
Sbjct: 474 RASKDRVRSLEVAKALQD 491
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 23.8 bits (49), Expect = 3.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 7 SAKVSLKSIEVPKALQDGEKFIKWDEDSGTGL 38
SAK LK E +LQD +K D TGL
Sbjct: 1198 SAKEMLKRFEKSVSLQDEQKNDVLSRDEDTGL 1229
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 23.8 bits (49), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 9 KVSLKSIEVPKALQDGEKFIKWDEDSGT 36
K S+K I LQ E++ +WD++ G+
Sbjct: 711 KTSIKVIRPSVNLQGLERYSEWDKEFGS 738
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 23.0 bits (47), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 1 MSASTRSAKVSLKSIEVPKALQDGEKFIKWDE 32
+ AS RS + LK ++P A++ + +I W+E
Sbjct: 127 VDASVRS-QCLLKYEDIPIAMEMSQNWIDWEE 157
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 23.0 bits (47), Expect = 5.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 45 DPNGFYLYWTDQNMEVELLDIVTIRDVRTGVHAKVPKI 82
DP+ F W + N E + +T+RD + V P +
Sbjct: 376 DPDAFESSWLEVNPEDIMEPKLTVRDFYSAVRKVKPTL 413
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 23.0 bits (47), Expect = 5.3
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 26 KFIKW--DEDSGTGLPVTLRVD-PNG 48
K + W DED GTGLP D P+G
Sbjct: 5 KSLDWADDEDYGTGLPSIQTFDNPDG 30
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 22.2 bits (45), Expect = 9.3
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1 MSASTRSAKVSLKSIEVPKALQDGEKFIKWDEDSGTGLPVTLRVD 45
++AST + V + + P + +GE F+ D T LP V+
Sbjct: 420 IAASTDAQVVDVPHLTAPIGINEGENFVT-IFDIETALPARKTVE 463
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 23 DGEKFIKWDEDSGTGLPV 40
+GE IKW E GLPV
Sbjct: 188 EGELAIKWLEFVNMGLPV 205
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,870
Number of Sequences: 5004
Number of extensions: 12872
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 10
length of query: 82
length of database: 2,362,478
effective HSP length: 60
effective length of query: 22
effective length of database: 2,062,238
effective search space: 45369236
effective search space used: 45369236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)
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