GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005189-TA|BGIBMGA005189-PA|undefined
         (82 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   0.49 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   1.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    20   3.5  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   3.5  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    19   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   6.1  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      19   6.1  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    19   8.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   8.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    19   8.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 0.49
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 51  LYWTDQNMEVELLDIVTIRDVRTGVH 76
           L W D NM   + D   +RD+R   H
Sbjct: 78  LEWNDVNMRWNVSDYGGVRDLRIPPH 103


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 54  TDQNMEVELLDIVTIRDVRTGVHAKVPKI 82
           T   + + +  ++T+  + TGV + +P+I
Sbjct: 270 TSARVALGITTVLTMTTISTGVRSSLPRI 298


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 28  IKWDEDSGTGLPVTLRVDPNGFYLYWTDQNMEVELLDI 65
           +K  E  G+   VTLR +     LY   +N+E++  +I
Sbjct: 75  VKIGESQGS---VTLRQEYKNIKLYGLTKNLEIKNYNI 109


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 71  VRTGVHAKVPKI 82
           VR  VH K+PK+
Sbjct: 278 VRASVHIKLPKL 289


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
          preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 15 IEVPKALQDGEKFIK 29
          I+VP     G KFIK
Sbjct: 55 IDVPPRCPPGSKFIK 69


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 6   RSAKVSLKSIEVPKALQDGEKFIKWDEDSG 35
           R     LK + VP  + D  K + W  D G
Sbjct: 116 RGNSAILKCV-VPSFVADFVKVLSWHTDQG 144


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 15 IEVPKALQDGEKFIK 29
          I+VP     G KFIK
Sbjct: 55 IDVPPRCPPGSKFIK 69


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding
          protein ASP6 protein.
          Length = 146

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 9  KVSLKSIEVPKALQDGE 25
          KV  K  + PK L DG+
Sbjct: 41 KVCSKKNDTPKELLDGQ 57


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 47  NGFYLYWTDQNMEVELLDI 65
           N  Y + TD+N     LDI
Sbjct: 230 NSDYSHTTDENRHSSTLDI 248


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding
          protein protein.
          Length = 120

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 9  KVSLKSIEVPKALQDGE 25
          KV  K  + PK L DG+
Sbjct: 15 KVCSKKNDTPKELLDGQ 31


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,647
Number of Sequences: 429
Number of extensions: 701
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 82
length of database: 140,377
effective HSP length: 47
effective length of query: 35
effective length of database: 120,214
effective search space:  4207490
effective search space used:  4207490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)