GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005188-TA|BGIBMGA005188-PA|IPR004010|Cache
         (1026 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   9.6  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 606 RGYL-ISHPGLMDPNSSGPIEQQHITHKESMIAIDMLNHKS 645
           RG L +S   L D  + GP E+ H+T+ +   +I M+ H S
Sbjct: 636 RGDLPLSISWLKDGRAMGPSERVHVTNMDQYNSILMIEHLS 676


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 187 GILHIDKWHTHSNNHSVMRLH 207
           G+ H+D  H H  NH  +  H
Sbjct: 272 GVYHLDNHHVHHANHHAILGH 292


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 267  WSDLAEDIIYFKGDHKKK 284
            WSD    +IYF  +HKKK
Sbjct: 1484 WSDGGCPMIYFVVEHKKK 1501


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 368 VSKQS-AQNSLNKTNV----YFARSNKEILFHRLDLFPPKSGKICRHFKQIAT 415
           + KQS   N + KT +    Y   S + +L   LD+  P +  + R+F  IAT
Sbjct: 789 IQKQSHTPNGIVKTWIAHDRYLPNSLRILLKRFLDITTPPTPNLLRYFASIAT 841


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,694
Number of Sequences: 429
Number of extensions: 12909
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 4
length of query: 1026
length of database: 140,377
effective HSP length: 65
effective length of query: 961
effective length of database: 112,492
effective search space: 108104812
effective search space used: 108104812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)