GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005185-TA|BGIBMGA005185-PA|undefined
         (179 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   2.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 103 KINEPAH--IKMLQKKKVTPRKLIKKSSAEQLKNTYLKKKSQNADLERKKLMVEILNFKK 160
           K++E A   +  L+++K    +    S+A     T  K++++   L+R  +   +L  KK
Sbjct: 303 KLDEDADGAVSPLRREKDRGSREYPTSNATDTDGT--KERTEEVALDRTPVTQGLLRVKK 360

Query: 161 EHELR 165
           E EL+
Sbjct: 361 EEELQ 365


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
          protein protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 27 QETLISDVVEITCTDEGNKLI 47
          +ET+    V+  CT +GNKLI
Sbjct: 73 EETVDGRKVKSVCTLDGNKLI 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,697
Number of Sequences: 429
Number of extensions: 1839
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 140,377
effective HSP length: 54
effective length of query: 125
effective length of database: 117,211
effective search space: 14651375
effective search space used: 14651375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)