GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005183-TA|BGIBMGA005183-PA|undefined
         (479 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   0.26 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   5.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   5.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   7.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   7.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 328 ENESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIERNGHCDS-EDSEQNYAMS 386
           E++S   Q +  +  +E  +  + +M+ + +VPQS    + +RN +  +  D  QN   +
Sbjct: 330 EHQSLDRQNIDVVARNEDTLQMVVSMKIKQNVPQSGRVNNTQRNEYLLALSDRNQNVLNN 389

Query: 387 SVNSENVD 394
            +N E+V+
Sbjct: 390 DLNLEHVN 397


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 50  TKSRSYSKQEHSNSGARSKTLERANTVQPTVSPKQNGLARVK 91
           +KSRS   ++ SN+   SKT+  +N     +      L ++K
Sbjct: 80  SKSRSPDSRDRSNTSNTSKTIILSNKGPEGIQINATELQKIK 121


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 50  TKSRSYSKQEHSNSGARSKTLERANTVQ 77
           +KSRS   ++ SN+   SKT+  +N ++
Sbjct: 80  SKSRSPDSRDRSNTSNTSKTIILSNKLE 107


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 50  TKSRSYSKQEHSNSGARSKTLERANTVQPTVSPKQNGLARVK 91
           +KSRS   ++ SN+   SKT+  +N     +      L ++K
Sbjct: 80  SKSRSPDSRDRSNTSNTSKTVILSNKGPEGIQINATELQKIK 121


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 50  TKSRSYSKQEHSNSGARSKTLERANTVQ 77
           +KSRS   ++ SN+   SKT+  +N ++
Sbjct: 80  SKSRSPDSRDRSNTSNTSKTVILSNKLE 107


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.121    0.321 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,546
Number of Sequences: 429
Number of extensions: 3480
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 479
length of database: 140,377
effective HSP length: 60
effective length of query: 419
effective length of database: 114,637
effective search space: 48032903
effective search space used: 48032903
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 45 (22.2 bits)