GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005182-TA|BGIBMGA005182-PA|IPR003337|Trehalose-
phosphatase, IPR006379|HAD-superfamily hydrolase, subfamily IIB,
IPR001830|Glycosyl transferase, family 20
         (733 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    29   0.14 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    29   0.14 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   6.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   8.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 377 RMNHLRRREQLNDVDSWMKAFLKAMDSLEEEADDLGATTMQPVTIDDFDEYLS 429
           R ++L +  Q    D W +  +K ++ LEEEA+      +Q   I  FD+Y++
Sbjct: 217 RRSNLSQPFQWLASDGWGRQ-IKLVEGLEEEAEGAITVELQSENIPGFDDYMA 268


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 377 RMNHLRRREQLNDVDSWMKAFLKAMDSLEEEADDLGATTMQPVTIDDFDEYLS 429
           R ++L +  Q    D W +  +K ++ LEEEA+      +Q   I  FD+Y++
Sbjct: 307 RRSNLSQPFQWLASDGWGRQ-IKLVEGLEEEAEGAITVELQSENIPGFDDYMA 358


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 110 LHIPFPPWDIFRLFPWSDEVLQGILGCDMVGFHIEDYCLNFIDCCQR 156
           L  P+PP+  F +   + +++ GILG  +      D  L F     R
Sbjct: 225 LFYPYPPYGTFNIKGDTFDLMDGILGLALGPIRNNDRILYFHSLASR 271


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 228 ERLLEKHPEHIEKVVLLQISVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPN 279
           E LL +H E +EK+++L+     R+ +K    LK+   +   +++   T PN
Sbjct: 641 ESLLNRHNEDMEKLMMLK-HREFRSSIKASDKLKDSRIKTTEKLS---TDPN 688


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 150  FIDCCQRNLGCRVDRKNLLVELG 172
            F  C QRNL      K  +VELG
Sbjct: 1005 FFGCRQRNLDLYRQEKEEMVELG 1027


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,466
Number of Sequences: 429
Number of extensions: 10222
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 8
length of query: 733
length of database: 140,377
effective HSP length: 63
effective length of query: 670
effective length of database: 113,350
effective search space: 75944500
effective search space used: 75944500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)