GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005181-TA|BGIBMGA005181-PA|IPR001830|Glycosyl
transferase, family 20
         (108 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   7.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   7.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   9.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   9.9  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 17  CNSKATMIVVSNRLPFILKRDENGVLQRKASAGGLVTAVAPVVI 60
           C S  + IV+ + + F+    +  V    AS  GL   V P  +
Sbjct: 377 CTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVYPSAV 420


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 87  NDKTPTAGLRSEKKNKGTY 105
           N+   T  L +EKK+K ++
Sbjct: 441 NENYKTVNLAAEKKDKNSF 459


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 87  NDKTPTAGLRSEKKNKGTY 105
           N+   T  L +EKK+K ++
Sbjct: 441 NENYKTVNLAAEKKDKNSF 459


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 68  GWPGIHLEDPNEKIP 82
           GW G ++ +P+ K P
Sbjct: 195 GWHGDNMLEPSPKTP 209


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 17  CNSKATMIVVSNRLPFILKRDENGVLQRKASAGGLVTAVAPVVI 60
           C S  + IV+ + + F+    +  V     S  GL   V P  +
Sbjct: 324 CTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVYPSAV 367


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,836
Number of Sequences: 429
Number of extensions: 1250
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 108
length of database: 140,377
effective HSP length: 50
effective length of query: 58
effective length of database: 118,927
effective search space:  6897766
effective search space used:  6897766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)
S2: 38 (19.4 bits)