Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005180-TA|BGIBMGA005180-PA|undefined
(313 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64315-1|AAB07689.1| 905|Homo sapiens DNA repair endonuclease s... 103 8e-22
L77890-1|AAB50174.1| 916|Homo sapiens DNA repair protein protein. 103 8e-22
AF491814-1|AAL91593.1| 916|Homo sapiens excision repair cross-c... 103 8e-22
BC020741-1|AAH20741.1| 356|Homo sapiens Unknown (protein for IM... 33 1.3
BC045635-1|AAH45635.1| 929|Homo sapiens unc-45 homolog A (C. el... 30 9.1
BC037992-1|AAH37992.1| 944|Homo sapiens unc-45 homolog A (C. el... 30 9.1
BC006214-1|AAH06214.1| 944|Homo sapiens unc-45 homolog A (C. el... 30 9.1
AB014736-1|BAB20273.1| 944|Homo sapiens SMAP-1b protein. 30 9.1
AB014729-1|BAB20266.1| 929|Homo sapiens SMAP-1 protein. 30 9.1
>U64315-1|AAB07689.1| 905|Homo sapiens DNA repair endonuclease
subunit protein.
Length = 905
Score = 103 bits (247), Expect = 8e-22
Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 36/341 (10%)
Query: 4 DAVSLYALVSKYRTPEYA-QINSGWILLESAEQLFKYAKARVFN---------------- 46
D V+ L+ R E A NSGW+ L+S+ +F A+ARV++
Sbjct: 291 DCVTFLNLLESLRATEKAFGQNSGWLFLDSSTSMFINARARVYHLPDAKMSKKEKISEKM 350
Query: 47 -------KKNEFDPEPSPKWKYLSDLLSQEIPDEVNKKKDSNLSNTKILILCQDNRTCSQ 99
K E E +PKW+ L+++L +EI E NK+ ++ ++LI D+RTCSQ
Sbjct: 351 EIKEGEETKKELVLESNPKWEALTEVL-KEIEAE-NKESEALGGPGQVLICASDDRTCSQ 408
Query: 100 LNHFLTMGANRYLLYT---AFKREIPINAVATKYEDIKNTVPVXXXXXXXXXXXXXXXXX 156
L ++T+GA +LL F+++ V K+ ++ +
Sbjct: 409 LRDYITLGAEAFLLRLYRKTFEKDSKAEEVWMKFRKEDSSKRIRKSHKRPKDPQNKERAS 468
Query: 157 XXEGTRLDDSKYEELNTEESRTNYLLTLTQSSAHCSKDNATVNESLFEPISQLD---NL- 212
E T + L + L ++ ++ ES E I + NL
Sbjct: 469 TKERTLKKKKRKLTLTQMVGKPEELEEEGDVEEGYRREISSSPESCPEEIKHEEFDVNLS 528
Query: 213 -DFTKIEVETPVICIQTFKENGNNLSLEYTLEALRPEYVILYHSDVAAVRQLEMYECRKK 271
D ++ P+ I + +L L + P YV+LY +++ VRQLE+Y +
Sbjct: 529 SDAAFGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRA-SR 587
Query: 272 PEEPICKVYFLIHDQTVEEQAYLAALKREKQAFELLIQAKS 312
P +P+ +VYFLI+ + EEQ YL AL++EK+AFE LI+ K+
Sbjct: 588 PGKPL-RVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKA 627
>L77890-1|AAB50174.1| 916|Homo sapiens DNA repair protein protein.
Length = 916
Score = 103 bits (247), Expect = 8e-22
Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 36/341 (10%)
Query: 4 DAVSLYALVSKYRTPEYA-QINSGWILLESAEQLFKYAKARVFN---------------- 46
D V+ L+ R E A NSGW+ L+S+ +F A+ARV++
Sbjct: 302 DCVTFLNLLESLRATEKAFGQNSGWLFLDSSTSMFINARARVYHLPDAKMSKKEKISEKM 361
Query: 47 -------KKNEFDPEPSPKWKYLSDLLSQEIPDEVNKKKDSNLSNTKILILCQDNRTCSQ 99
K E E +PKW+ L+++L +EI E NK+ ++ ++LI D+RTCSQ
Sbjct: 362 EIKEGEETKKELVLESNPKWEALTEVL-KEIEAE-NKESEALGGPGQVLICASDDRTCSQ 419
Query: 100 LNHFLTMGANRYLLYT---AFKREIPINAVATKYEDIKNTVPVXXXXXXXXXXXXXXXXX 156
L ++T+GA +LL F+++ V K+ ++ +
Sbjct: 420 LRDYITLGAEAFLLRLYRKTFEKDSKAEEVWMKFRKEDSSKRIRKSHKRPKDPQNKERAS 479
Query: 157 XXEGTRLDDSKYEELNTEESRTNYLLTLTQSSAHCSKDNATVNESLFEPISQLD---NL- 212
E T + L + L ++ ++ ES E I + NL
Sbjct: 480 TKERTLKKKKRKLTLTQMVGKPEELEEEGDVEEGYRREISSSPESCPEEIKHEEFDVNLS 539
Query: 213 -DFTKIEVETPVICIQTFKENGNNLSLEYTLEALRPEYVILYHSDVAAVRQLEMYECRKK 271
D ++ P+ I + +L L + P YV+LY +++ VRQLE+Y +
Sbjct: 540 SDAAFGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRA-SR 598
Query: 272 PEEPICKVYFLIHDQTVEEQAYLAALKREKQAFELLIQAKS 312
P +P+ +VYFLI+ + EEQ YL AL++EK+AFE LI+ K+
Sbjct: 599 PGKPL-RVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKA 638
>AF491814-1|AAL91593.1| 916|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 916
Score = 103 bits (247), Expect = 8e-22
Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 36/341 (10%)
Query: 4 DAVSLYALVSKYRTPEYA-QINSGWILLESAEQLFKYAKARVFN---------------- 46
D V+ L+ R E A NSGW+ L+S+ +F A+ARV++
Sbjct: 302 DCVTFLNLLESLRATEKAFGQNSGWLFLDSSTSMFINARARVYHLPDAKMSKKEKISEKM 361
Query: 47 -------KKNEFDPEPSPKWKYLSDLLSQEIPDEVNKKKDSNLSNTKILILCQDNRTCSQ 99
K E E +PKW+ L+++L +EI E NK+ ++ ++LI D+RTCSQ
Sbjct: 362 EIKEGEETKKELVLESNPKWEALTEVL-KEIEAE-NKESEALGGPGQVLICASDDRTCSQ 419
Query: 100 LNHFLTMGANRYLLYT---AFKREIPINAVATKYEDIKNTVPVXXXXXXXXXXXXXXXXX 156
L ++T+GA +LL F+++ V K+ ++ +
Sbjct: 420 LRDYITLGAEAFLLRLYRKTFEKDSKAEEVWMKFRKEDSSKRIRKSHKRPKDPQNKERAS 479
Query: 157 XXEGTRLDDSKYEELNTEESRTNYLLTLTQSSAHCSKDNATVNESLFEPISQLD---NL- 212
E T + L + L ++ ++ ES E I + NL
Sbjct: 480 TKERTLKKKKRKLTLTQMVGKPEELEEEGDVEEGYRREISSSPESCPEEIKHEEFDVNLS 539
Query: 213 -DFTKIEVETPVICIQTFKENGNNLSLEYTLEALRPEYVILYHSDVAAVRQLEMYECRKK 271
D ++ P+ I + +L L + P YV+LY +++ VRQLE+Y +
Sbjct: 540 SDAAFGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRA-SR 598
Query: 272 PEEPICKVYFLIHDQTVEEQAYLAALKREKQAFELLIQAKS 312
P +P+ +VYFLI+ + EEQ YL AL++EK+AFE LI+ K+
Sbjct: 599 PGKPL-RVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKA 638
>BC020741-1|AAH20741.1| 356|Homo sapiens Unknown (protein for
IMAGE:4732192) protein.
Length = 356
Score = 33.1 bits (72), Expect = 1.3
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 4 DAVSLYALVSKYRTPEYA-QINSGWILLESAEQLFKYAKARVFN 46
D V+ L+ R E A NSGW+ L+S+ +F A+ARV++
Sbjct: 291 DCVTFLNLLESLRATEKAFGQNSGWLFLDSSTSMFINARARVYH 334
>BC045635-1|AAH45635.1| 929|Homo sapiens unc-45 homolog A (C.
elegans) protein.
Length = 929
Score = 30.3 bits (65), Expect = 9.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 30 LESAEQLFKYAKARVFNKKNEFD-PEPSPKWKYLSDLLSQEIPDEVNKKKDS 80
LE LF A A V N N +D EP PK L+ Q +P++ K K S
Sbjct: 565 LEERSVLFAVASALV-NCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPS 615
>BC037992-1|AAH37992.1| 944|Homo sapiens unc-45 homolog A (C.
elegans) protein.
Length = 944
Score = 30.3 bits (65), Expect = 9.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 30 LESAEQLFKYAKARVFNKKNEFD-PEPSPKWKYLSDLLSQEIPDEVNKKKDS 80
LE LF A A V N N +D EP PK L+ Q +P++ K K S
Sbjct: 580 LEERSVLFAVASALV-NCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPS 630
>BC006214-1|AAH06214.1| 944|Homo sapiens unc-45 homolog A (C.
elegans) protein.
Length = 944
Score = 30.3 bits (65), Expect = 9.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 30 LESAEQLFKYAKARVFNKKNEFD-PEPSPKWKYLSDLLSQEIPDEVNKKKDS 80
LE LF A A V N N +D EP PK L+ Q +P++ K K S
Sbjct: 580 LEERSVLFAVASALV-NCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPS 630
>AB014736-1|BAB20273.1| 944|Homo sapiens SMAP-1b protein.
Length = 944
Score = 30.3 bits (65), Expect = 9.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 30 LESAEQLFKYAKARVFNKKNEFD-PEPSPKWKYLSDLLSQEIPDEVNKKKDS 80
LE LF A A V N N +D EP PK L+ Q +P++ K K S
Sbjct: 580 LEERSVLFAVASALV-NCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPS 630
>AB014729-1|BAB20266.1| 929|Homo sapiens SMAP-1 protein.
Length = 929
Score = 30.3 bits (65), Expect = 9.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 30 LESAEQLFKYAKARVFNKKNEFD-PEPSPKWKYLSDLLSQEIPDEVNKKKDS 80
LE LF A A V N N +D EP PK L+ Q +P++ K K S
Sbjct: 565 LEERSVLFAVASALV-NCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPS 615
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,889,697
Number of Sequences: 224733
Number of extensions: 1610081
Number of successful extensions: 3685
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3672
Number of HSP's gapped (non-prelim): 15
length of query: 313
length of database: 73,234,838
effective HSP length: 90
effective length of query: 223
effective length of database: 53,008,868
effective search space: 11820977564
effective search space used: 11820977564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -