GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005180-TA|BGIBMGA005180-PA|undefined
         (313 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 191 CSKDNATVNESLFEPISQLDNLDFTKIE 218
           C +D   +N+SL    + L NLD + +E
Sbjct: 25  CGRDTYALNQSLHFVRASLSNLDMSVLE 52


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 56  SPKWKYLSDLLSQEIPDEVNK----KKDSNLSNTKILILCQDNRTCSQLNHFLTMGANRY 111
           S  W      L     +E+NK     K SNLS  K  +L ++  TC +  H L    ++ 
Sbjct: 345 SEYWMETRGFLQPVCQNEMNKWWWNMKISNLSFDKQSLLKENTVTCQEAMHMLKNADSQL 404

Query: 112 LL 113
           L+
Sbjct: 405 LV 406


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 191 CSKDNATVNESLFEPISQLDNLDFTKIE 218
           C +D   +N+SL    + L NLD + +E
Sbjct: 115 CGRDTYALNQSLHFVRASLSNLDMSVLE 142


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 31  ESAEQLFKYAKARVFNKKNEFDPEPSPKWKYLSDLLSQEIPDE---VNKKKDSNLSNTKI 87
           +  +Q F + +   +N  N F  + +      SD+L ++  +E   +N+K    L N ++
Sbjct: 124 QKLDQKFIFPQENNYND-NYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQEV 182

Query: 88  LILCQDNRTCS 98
            +   +N++C+
Sbjct: 183 SMENTENKSCT 193


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,329
Number of Sequences: 429
Number of extensions: 3795
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 313
length of database: 140,377
effective HSP length: 58
effective length of query: 255
effective length of database: 115,495
effective search space: 29451225
effective search space used: 29451225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)