GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005178-TA|BGIBMGA005178-PA|undefined
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    29   0.59 
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    29   1.0  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   7.3  

>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 79  SPLHVSDLSSVPFPSSADGSFPTPPSP 105
           SP H S L S+P  +S  G F TP  P
Sbjct: 125 SPSHTSSLDSIPGYASGSGPFKTPYRP 151


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/45 (40%), Positives = 20/45 (44%)

Query: 81  LHVSDLSSVPFPSSADGSFPTPPSPFRLRSIRQSGEPIRGVIGGL 125
           LH     S P PS+A      P S  RL S   SG P   V+G L
Sbjct: 150 LHDHFSVSDPSPSTAQNHRSPPASCKRLSSCESSGSPSSRVVGSL 194


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 81  LHVSDLSSVPFPSSADGSFP 100
           LH+SD S+V  P S D SFP
Sbjct: 154 LHLSDPSAVSTPISPDYSFP 173


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,367
Number of Sequences: 5004
Number of extensions: 19791
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 3
length of query: 292
length of database: 2,362,478
effective HSP length: 72
effective length of query: 220
effective length of database: 2,002,190
effective search space: 440481800
effective search space used: 440481800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)