GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005177-TA|BGIBMGA005177-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR012975|NOPS
         (650 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   1.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   5.9  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   5.9  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   5.9  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   5.9  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   5.9  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   5.9  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   5.9  

>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 298 LFLNKEKNFGFIKMDYRVNAERAKRELDGKLR-NSRTLRVRFAPHNSAVRVKNLPPFVSN 356
           LF+        IKM+Y V     ++ LD +LR N    R+++     A RV     F SN
Sbjct: 65  LFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLTLTDASRVWMPDLFFSN 124

Query: 357 ELLYRSFEIFGKIERAYVKVDERGKTL 383
           E       I   +   Y+++   G  L
Sbjct: 125 EKEGHFHNII--MPNVYIRIFPNGSVL 149


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 439 KHPEFTKARELGPRFSELNSFEHEYGTRWKQL 470
           K P+   +     ++S  N++ + Y T +K+L
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 439 KHPEFTKARELGPRFSELNSFEHEYGTRWKQL 470
           K P+   +     ++S  N++ + Y T +K+L
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 439 KHPEFTKARELGPRFSELNSFEHEYGTRWKQL 470
           K P+   +     ++S  N++ + Y T +K+L
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 439 KHPEFTKARELGPRFSELNSFEHEYGTRWKQL 470
           K P+   +     ++S  N++ + Y T +K+L
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 439 KHPEFTKARELGPRFSELNSFEHEYGTRWKQL 470
           K P+   +     ++S  N++ + Y T +K+L
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 439 KHPEFTKARELGPRFSELNSFEHEYGTRWKQL 470
           K P+   +     ++S  N++ + Y T +K+L
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 439 KHPEFTKARELGPRFSELNSFEHEYGTRWKQL 470
           K P+   +     ++S  N++ + Y T +K+L
Sbjct: 77  KEPKIISSLSNNYKYSNYNNYNNNYNTNYKKL 108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,688
Number of Sequences: 429
Number of extensions: 5830
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 650
length of database: 140,377
effective HSP length: 62
effective length of query: 588
effective length of database: 113,779
effective search space: 66902052
effective search space used: 66902052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)