Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005176-TA|BGIBMGA005176-PA|IPR010989|t-snare,
IPR000928|SNAP-25, IPR000727|Target SNARE coiled-coil region
(162 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 40 2e-04
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 35 0.005
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||... 29 0.34
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 28 0.59
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 28 0.59
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 28 0.59
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 1.0
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 27 1.4
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 1.4
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 27 1.8
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 2.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 3.2
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 5.5
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 25 5.5
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 5.5
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 5.5
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 7.3
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 24 9.6
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 24 9.6
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 39.5 bits (88), Expect = 2e-04
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 97 NDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNETRITLANQR 156
+DA E E++ N+ Q+ + L+ +A G E+++QN ++ I+ K + +T + L +R
Sbjct: 355 DDAMEKEIDGNLDQIGALATRLKGLAYATGQEIDSQNARLGSIHDKSDRLDTDVYLNVER 414
Query: 157 AHEL 160
+
Sbjct: 415 LRHI 418
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 35.1 bits (77), Expect = 0.005
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 102 DEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNETRITLANQRAHEL 160
+E EE++G + + + M M +EL QN +D +N + E R A R +++
Sbjct: 163 NEQEESLGGIEASVQRQKRMGYAMNTELSEQNVLLDNMNNDADRIERRFDHAKNRLNKV 221
>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 29.1 bits (62), Expect = 0.34
Identities = 9/54 (16%), Positives = 34/54 (62%)
Query: 98 DAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNETRIT 151
D+ E+E +E + ++ + +L+ + +++G+E+ + + ++ +N +S ++ ++
Sbjct: 28 DSLENENDERISKLTGKVKSLKELTMNIGTEITSSTKLMESMNDSFDSTKSLLS 81
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 28.3 bits (60), Expect = 0.59
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 71 VNNQPQRVMDERN-GIGPQAGYIGRITNDAREDEMEENMGQVNTMIGNLRNMALDMGSEL 129
V+ +P V + + G+ + + R + + + + V IGN+R A MG EL
Sbjct: 105 VSTEPYTVDNGASAGLSEEDHAVNRQYQEQLYQQQDVMLDGVYDTIGNIRGQAALMGEEL 164
Query: 130 ENQNRQIDRINRKGESNETRITLANQR 156
Q +D ++ E+ +++ +R
Sbjct: 165 GQQADLLDTLDNSIETTNSKLRRGMKR 191
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 28.3 bits (60), Expect = 0.59
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 27 DMREAEKNLSGMEKCCGICVLPC 49
++ EA KN S C CVLPC
Sbjct: 788 NLTEARKNFSNYRDCLENCVLPC 810
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 0.59
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 89 AGYIGRITNDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDR 138
+ Y+ R+ ND R + G+++ LRN+A D+ ++LE++ + D+
Sbjct: 194 SAYLSRLDNDRRL--ADHFSGKMHLGYAMLRNIARDLRAQLEDREKSRDK 241
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 97 NDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNETRITLANQR 156
N RE E+ + +N +GN N+ D+ ++L ++ ++ + + ++ +I N+R
Sbjct: 778 NTIREAELSKKA--LNDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNER 835
Score = 27.5 bits (58), Expect = 1.0
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 65 NDDGKVVNNQPQRVMDERNGIGPQAGYIGRITNDARE--DEMEENMGQVNTMIGNLRNMA 122
ND K V+N Q E++ + + + +A E + +E + ++ I L+N +
Sbjct: 913 NDSLKSVSNDDQN--KEKSVNNEKFKEVSQALAEANEKLNARDEEIERLKVDIIGLQNAS 970
Query: 123 LDMGSELENQNRQIDRINRKGESNETRITLANQ 155
L+M S ++ NR I + K + E ++ A++
Sbjct: 971 LNMQSLKDSDNRTISDLESKNKELEKKLKEADE 1003
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 104 MEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNETRITLA 153
+ +N+G +I +L+N + + L+ Q+++ + E+ RI+ A
Sbjct: 790 LNDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAA 839
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 5 VMLDEQGEQLDRIEEGMDQINADMREAEKNL 35
V++ EQG +DRI+ ++Q + AEK L
Sbjct: 235 VLVIEQGALVDRIDFNIEQTQVHAKSAEKEL 265
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 64 GNDDGKVVNNQPQRVMDERNGIGPQAGYIGRITNDAREDEMEENMGQVN 112
G+ G++ + + +R + ERNG G + G + + EDE+ E Q++
Sbjct: 24 GSIHGEITDVKRRR-LSERNGYGDKKGSSSKEKTSSFEDELAEYASQLD 71
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 1.8
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 68 GKVVNNQPQRVMDERNGIGPQAGYIGRITNDAREDEMEENMGQVNTMIGNLRNMALDMGS 127
G + N P ++M NG GP+ + + E + G G LR D+
Sbjct: 127 GSEIRNGPLQIMVSTNGKGPK---LASLIRKKIESSINPATGMALEKTGLLRQKLRDIVP 183
Query: 128 ELENQNRQI 136
E EN +++
Sbjct: 184 EPENSRKRM 192
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 107 NMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKG--ESNETRIT 151
N G +N + NL+NM LD + ++ ++DR E N++ I+
Sbjct: 604 NSGALNETVQNLKNMELDDPAPQPAKHSRVDRYEHPKVLEDNDSTIS 650
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 114 MIGNLRNMALDMGSELENQNRQIDRINRKGES 145
+I LRN + + LENQN++ D + + +S
Sbjct: 92 LISVLRNENESLKTNLENQNKRFDALTTENQS 123
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 5.5
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 123 LDMGSELENQNRQIDRINRKGESNETRITLANQRAHE 159
+D+ + N Q++ + + E N+T++ R HE
Sbjct: 50 IDLRTTAINLEEQLETVQNENEENKTKLAALLNRFHE 86
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 2 KTLVMLDEQGEQLDRIEEGMDQINADMREAEKNLSGMEKCC 42
KT+ + +GE+LD + + D ++ R K+ CC
Sbjct: 154 KTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAKKQNSCC 194
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 5.5
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 TLVMLDEQGEQLDRIEEGMDQINADMREAEKNLSGMEKCCGICVLPCN 50
TL +EQ + L +++E +D +N + E + L G+E + CN
Sbjct: 474 TLEFHEEQNKSL-KLQEHVDTVNDLIAELQDELRGIESRLTSVLSECN 520
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 104 MEENMGQVNTMIGNLRNMALDMGSELENQNRQ 135
+EEN+ Q G RN +G E E +N++
Sbjct: 770 IEENLEQPRKTYGTKRNAQQALGKEGERENKE 801
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 101 EDEMEENMGQVNTMIGNLRNMALDMGSE--LENQNRQIDRINRKGE 144
E E E +N + L + L+ G E +N+ + R+ +G+
Sbjct: 30 EKEKESTEASINMFLAELERLQLEYGKEHIWQNEELNLQRVEYQGK 75
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 9.6
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 11 GEQ-LDRIEEGMDQINADMREAEKNLSGMEKCCGICVLPCNKGASFKEDDGTWKGND 66
GE+ LD E D + E +S E+ GI V + + K DDG G D
Sbjct: 518 GEKFLDERPEETDNYLLTLESTEDTISSYEETEGIPVKKVSYDSKEKSDDGKSGGID 574
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 24.2 bits (50), Expect = 9.6
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 3/138 (2%)
Query: 7 LDEQGEQLDRIEEGMDQINADMREAEKNLSGMEKCCGICVLPCNKGASFKEDDGTWKGND 66
LD + G+D +NA E LS ++ I V + A K++ K
Sbjct: 213 LDHDLQASQNESAGLD-VNAKSAEVNAILSELDDANKIIVELQAEIAVLKQNTKEQKSGS 271
Query: 67 DGKVVNNQPQRVMDERNGIGPQAGYIGRITNDAREDEMEENMGQVNTMIGNLR--NMALD 124
++NQ ++ +D + + + +A EME + + T+ ++ +
Sbjct: 272 SQDDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETHCATIQTLENEVKEARKVKE 331
Query: 125 MGSELENQNRQIDRINRK 142
L N+ D I R+
Sbjct: 332 ESLTLANKFSDYDEIKRE 349
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,109
Number of Sequences: 5004
Number of extensions: 30570
Number of successful extensions: 89
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 23
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)
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