GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005176-TA|BGIBMGA005176-PA|IPR010989|t-snare,
IPR000928|SNAP-25, IPR000727|Target SNARE coiled-coil region
         (162 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.49 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   3.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 79  MDERNGIGPQAGYIGRITNDAREDEMEENMGQVNTM 114
           M   N    Q   +  +TND R D+M    G++N++
Sbjct: 1   MLSNNSSMTQTELLQELTNDCRYDKMTRPPGEINSI 36


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 93  GRITNDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQ 135
           G+ + +   D ME    +   +I +L N  +   +   N N +
Sbjct: 282 GKTSKERSRDRMERERSKEPKIISSLSNKTIHNNNNYNNYNNK 324


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/32 (25%), Positives = 20/32 (62%)

Query: 7   LDEQGEQLDRIEEGMDQINADMREAEKNLSGM 38
           LD++  +  ++EE M +++ +M+  ++ L  M
Sbjct: 367 LDQEQLKSKKLEESMRKLDEEMKRTDELLYQM 398


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,461
Number of Sequences: 429
Number of extensions: 1842
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 162
length of database: 140,377
effective HSP length: 53
effective length of query: 109
effective length of database: 117,640
effective search space: 12822760
effective search space used: 12822760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)