GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005175-TA|BGIBMGA005175-PA|undefined
         (50 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   3.7  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    23   6.5  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    23   6.5  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 6   PPAENGGPRSELEQLQMRAGQVTDESLESTRR 37
           P A+N   R ELEQ Q    Q   +S E  R+
Sbjct: 91  PQAKNSLTRDELEQSQQALKQEQLDSFEILRK 122


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 1   MPAAVPPAENGGPRSELEQLQMRAGQVTDES 31
           +P  V P E     S+L +L++  G VTD+S
Sbjct: 769 LPYIVAPQEAEAQCSKLLELKLVDGIVTDDS 799


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 9   ENGGPRSELEQLQMRAGQVTDESLESTRRMMQLCEEVSFQF 49
           +N     E E+LQMR       S+E  + ++   E++  +F
Sbjct: 117 DNCAEEDEEEELQMRYSADESVSVEYAKEILSHMEKLEIRF 157


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.128    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,020
Number of Sequences: 5004
Number of extensions: 4245
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 50
length of database: 2,362,478
effective HSP length: 31
effective length of query: 19
effective length of database: 2,207,354
effective search space: 41939726
effective search space used: 41939726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)