Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005174-TA|BGIBMGA005174-PA|IPR001926|Pyridoxal-5'-
phosphate-dependent enzyme, beta subunit, IPR001216|Cysteine
synthase/cystathionine beta-synthase P-phosphate-binding site
(196 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 124 1e-29
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 93 2e-20
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 45 9e-06
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 32 0.049
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 28 1.1
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 3.2
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 26 3.2
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc... 26 4.3
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 26 4.3
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 4.3
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 25 5.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.4
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 7.4
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 9.8
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.8
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 124 bits (298), Expect = 1e-29
Identities = 69/146 (47%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 39 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILK 98
S + IG TPL++L+ L + G C + AK EF NPGGSVKDR AY + DAE+KG L
Sbjct: 15 SGFIGAIGRTPLIRLNTLSNETG--CNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLS 72
Query: 99 PGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVTLGAEIIRTPTEAA 158
G IVE T+GNTGIGLA A RGY+C+I +P S K++TL LGAE+ P A
Sbjct: 73 RG-GTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPV-AP 130
Query: 159 WDSPESNIMVAHRLAKEIPHAIILDQ 184
+ +P + A R A+ P+A DQ
Sbjct: 131 FSNPLNYNHQARRHAESTPNASWTDQ 156
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 93.1 bits (221), Expect = 2e-20
Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 6 DAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILN----VIGNTPLVKLSKLPKDEG 61
D +G + A + L+ + +R + DI+N +IGNT +V++ L + G
Sbjct: 7 DLASGIAMGAVFMYLLRRLYESLRVKSSADSLEEDIVNGVEGLIGNTKMVRIKSLSQATG 66
Query: 62 LKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKS-VIVEPTSGNTGIGLALAA 120
C++ AK EFLNPG S KDR+A +M AE+ G L P +S + E T+G+TGI +A+
Sbjct: 67 --CDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLC 124
Query: 121 AVRGYRCIIVLPEKMSDEKVNTLVTLGAEIIRTPTEAAWDSPESNIMVAHRLA 173
GY I +P S EK + L LGA + R T A P + A R A
Sbjct: 125 CSLGYDSRIYMPSDQSKEKSDILELLGAHVQRV-TPAPIVDPNHFVNTARRNA 176
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 44.8 bits (101), Expect = 9e-06
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 39 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILK 98
S++ VI TPL K + + G+ +Y K E L P S K R A+ +++ +
Sbjct: 105 SNVYEVIKETPLTKGVVISESTGVP--VYLKREDLTPVFSFKIRGAHNKMASLDKQSL-- 160
Query: 99 PGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVTLGAEII 151
K+ ++ ++GN G+A +A G + IV+P+ + K + LGA ++
Sbjct: 161 --KNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGANVL 211
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 32.3 bits (70), Expect = 0.049
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 48 TPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKSVIVEP 107
TP++ S + K+ E++ KCE G+ K +R L+A + K+ ++
Sbjct: 27 TPVLTSSTVNKE--FVAEVFFKCENFQKMGAFK----FRGALNALSQLNEAQRKAGVLTF 80
Query: 108 TSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVTLGAEII 151
+SGN +AL+A + G I++P + KV G ++I
Sbjct: 81 SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVI 124
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 46 GNTPLVKLSKLPKDEGLKCEMYAKCEFLNPG 76
G TP+ + +L K G K E++AK E N G
Sbjct: 14 GPTPITSMKRLSKTLGGKVEIFAKREDCNSG 44
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 70 CEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAV 122
C+ L P G ++ A + KG LKP +S+ +E T + + ++ AAV
Sbjct: 679 CDVLRPMGCTVEQTATSTTVQGPPKGTLKPLESIDME-TMTDAFLTASVVAAV 730
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 11 TSNSARKFFTLKDMPHIVRALDRNQKVHSDILNVIGNTPLVKLSKLPKDE 60
T+ +++K L + H V + + + + D+L L+KL LP+D+
Sbjct: 88 TTKTSQKLVLLPEN-HAVNSFNEEESNYEDLLTPSDAYNLIKLENLPRDK 136
>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 91 AEQKGILKPGKSVIVEPTSGNTGIGLALAA 120
A QKG +KPG+ V++ TG G ALAA
Sbjct: 110 AIQKGTIKPGQRVLIVDDILATG-GTALAA 138
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 4.3
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 97 LKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVTLGA-EIIRTPT 155
+KPG +V+V T G + L A A V SDEK+ LGA I
Sbjct: 163 VKPGNNVLVLGTGGVSTFALQFALAAGAN----VTVTSSSDEKLEFAKKLGATHTINYKK 218
Query: 156 EAAWDSP 162
W SP
Sbjct: 219 TPQWASP 225
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 53 LSKLPK--DEGLKCEMYAKCEFLNPGGSVKDRIAYR 86
LS++ K D GLK + AK + NP +++D + YR
Sbjct: 332 LSEMDKGSDVGLKNCIRAKISYENPNKAMRDPVIYR 367
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 97 LKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVTLGA 148
+KPG +++E SG G+G A + C + S E ++ +LGA
Sbjct: 163 VKPGTKLVIEGASG--GVGTFAVALAKALECEVTTIS--STENLDLCKSLGA 210
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 38 HSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVK 80
H D LN I T +SK K + ++YA L GG +K
Sbjct: 1231 HPDFLNAIYMTTRGGVSKAQKGLHVNEDIYAGMTALQRGGRIK 1273
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 38 HSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVK 80
H D LN I T +SK K + ++YA L GG +K
Sbjct: 1165 HPDFLNTIFMTTRGGVSKAQKGLHVNEDIYAGMTALQRGGRIK 1207
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 150 IIRTP--TEAAWDSPESNIMVAHR-----LAKEIPHAIILD 183
II P TE+AW SP + HR L ++PH L+
Sbjct: 91 IINVPFSTESAWSSPSGLYLQRHRSSDENLNTDLPHIFCLN 131
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 28 VRALDRNQKVHSDILNVIGNTPLVKLSKLPKD 59
VR + N+ +H + +V+ + P VK +L ++
Sbjct: 833 VRTMFYNEPIHQNAFHVVPSMPFVKFIRLDEN 864
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,811
Number of Sequences: 5004
Number of extensions: 36331
Number of successful extensions: 77
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 15
length of query: 196
length of database: 2,362,478
effective HSP length: 69
effective length of query: 127
effective length of database: 2,017,202
effective search space: 256184654
effective search space used: 256184654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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