GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005174-TA|BGIBMGA005174-PA|IPR001926|Pyridoxal-5'-
phosphate-dependent enzyme, beta subunit, IPR001216|Cysteine
synthase/cystathionine beta-synthase P-phosphate-binding site
         (196 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...   237   4e-65
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.63 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   4.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score =  237 bits (581), Expect = 4e-65
 Identities = 112/161 (69%), Positives = 134/161 (83%), Gaps = 2/161 (1%)

Query: 25  PHIVRALDRNQ-KVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRI 83
           PH  R  + +  K+  DIL  IG TPL+KL+ +PK  G+KCE+YAKCEFLNPGGSVKDRI
Sbjct: 22  PHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKDRI 81

Query: 84  AYRMFLDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTL 143
           AYRM  DAE KG+LKPG   I+EPTSGNTGIGLA+AAAVRGY+CIIV+PEKMSDEK++TL
Sbjct: 82  AYRMIQDAEDKGLLKPG-CTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKISTL 140

Query: 144 VTLGAEIIRTPTEAAWDSPESNIMVAHRLAKEIPHAIILDQ 184
             LGA+IIRTPTEA+W SPE++I VA +L KEIP++IILDQ
Sbjct: 141 YALGAKIIRTPTEASWHSPEAHISVAQKLQKEIPNSIILDQ 181


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 50  LVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEQKGILKPGKSVIVEPT 108
           ++K  + P D  +  E+  + +   P G VK  IA+  +L    + +LK    +   PT
Sbjct: 771 ILKRVQTPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLPNSLRILLKRFLDITTPPT 829


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 35 QKVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRM 87
          +K   +    I +    +  + P+DE LKC      E  N       +I Y +
Sbjct: 41 KKCIGETKTTIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNL 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,035
Number of Sequences: 429
Number of extensions: 2155
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 196
length of database: 140,377
effective HSP length: 55
effective length of query: 141
effective length of database: 116,782
effective search space: 16466262
effective search space used: 16466262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)