GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005173-TA|BGIBMGA005173-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap
         (288 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   112   3e-27
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   1.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  112 bits (270), Expect = 3e-27
 Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 27/256 (10%)

Query: 44  CGIQNNDRIFGGIQTEIDEHPWMA-LLRYDKPLGWGFYCGGVLIAP-----ISQVRLGEW 97
           CG +N  RI GG  T I+E P MA + R  +P   G  CG  +I+       +   + E 
Sbjct: 153 CGWKNPSRIVGGTNTGINEFPMMAGIKRTYEP---GMICGATIISKRYVLTAAHCIIDEN 209

Query: 98  NTSTETDCVEGDCSGPVQDIP-----VQQIIAHENYDPNDKD--QQNDIALLRLSRNAQF 150
            T       E D S   +        + ++I H  YD  +KD  Q NDIALL+  ++ +F
Sbjct: 210 TTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKF 269

Query: 151 NDFVSPICLPTSNELRQNEFESDYMEVAGWGKTETRSE-SDVKLKVRVPIVNREECANVY 209
            D V P CLP  + L  + F    + V GWG T      S +  K  + ++ + EC   Y
Sbjct: 270 GDKVGPACLPFQHFL--DSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYY 327

Query: 210 SNVDRRVTNKQICAGGLAGRDSCRGDSGGALMGQSPKANNWYVFGVVSYGPSPCGTEGWP 269
            N+   + N  +CA    G+D+C+ DSGG ++ Q+P+       G++S+G + CG   +P
Sbjct: 328 GNI---MVNA-MCAYA-KGKDACQMDSGGPVLWQNPRTKRLVNIGIISWG-AECGK--YP 379

Query: 270 GVYTRVGSFMDWILSK 285
              T+VGS++DWI+S+
Sbjct: 380 NGNTKVGSYIDWIVSQ 395


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 198 PIVNREECANVYSNVDRRVTNKQICAGGLAGRDSCRGDSGGALMGQSPKANNWYVFGVVS 257
           P++  E C  V+S+    ++   I  GG A R          + G+  + +NW V  ++ 
Sbjct: 50  PVIG-EPCQRVHSSRIPDLSYDFIVVGGGAAR--------AVVAGRLSEVSNWKVL-LLE 99

Query: 258 YGP-SPCGTEGWPGVYTRVGSFMDW 281
            GP  P G E    +   +G  +DW
Sbjct: 100 AGPDEPAGAEIPSNLQLYLGGDLDW 124


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 15  PPEFLARRSAFSSAGTNSNPTSILPNEKVCGI--QNND 50
           P EFL   S ++    + + T IL    VCG+  ++ND
Sbjct: 646 PEEFLRPESGWAIGAMSFSATGILITLFVCGVFLKHND 683


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 63  HPWMALLRYDKPLGW 77
           H WM L+  D  L W
Sbjct: 92  HSWMTLMWTDSHLSW 106


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,379
Number of Sequences: 429
Number of extensions: 3985
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 288
length of database: 140,377
effective HSP length: 57
effective length of query: 231
effective length of database: 115,924
effective search space: 26778444
effective search space used: 26778444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)