Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005169-TA|BGIBMGA005169-PA|IPR009088|Transcription
factor IIA, beta-barrel, IPR009083|Transcription factor IIA, helical,
IPR003194|Transcription initiation factor IIA, gamma subunit
(109 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X81713-1|CAA57357.1| 109|Homo sapiens smallest subunit of TFIIA... 168 4e-42
U21242-1|AAB58247.1| 109|Homo sapiens transcription factor TFII... 168 4e-42
U14193-1|AAA64951.1| 109|Homo sapiens transcription factor IIA ... 168 4e-42
CR542192-1|CAG46989.1| 109|Homo sapiens GTF2A2 protein. 168 4e-42
BT007362-1|AAP36026.1| 109|Homo sapiens general transcription f... 168 4e-42
BC001919-1|AAH01919.1| 109|Homo sapiens general transcription f... 168 4e-42
BC000287-1|AAH00287.1| 109|Homo sapiens general transcription f... 168 4e-42
BC064389-1|AAH64389.1| 559|Homo sapiens SSX2IP protein protein. 29 2.2
BC033637-1|AAH33637.1| 614|Homo sapiens SSX2IP protein protein. 29 2.2
BC014539-1|AAH14539.1| 468|Homo sapiens secretogranin III protein. 29 2.2
BC009511-1|AAH09511.2| 233|Homo sapiens SCG3 protein protein. 29 2.2
AY359093-1|AAQ89451.1| 468|Homo sapiens secretogranin protein. 29 2.2
AF453583-1|AAL67431.1| 468|Homo sapiens secretogranin III protein. 29 2.2
AB023140-1|BAA76767.2| 626|Homo sapiens KIAA0923 protein protein. 29 2.2
Z81365-3|CAI43184.1| 913|Homo sapiens ubiquitin specific peptid... 28 5.2
BC101191-1|AAI01192.1| 913|Homo sapiens ubiquitin specific pept... 28 5.2
BC101190-1|AAI01191.1| 913|Homo sapiens ubiquitin specific pept... 28 5.2
BC101189-1|AAI01190.1| 913|Homo sapiens ubiquitin specific pept... 28 5.2
BC069073-1|AAH69073.1| 913|Homo sapiens ubiquitin specific pept... 28 5.2
AF285593-1|AAK31972.1| 913|Homo sapiens ubiquitin specific prot... 28 5.2
AY367055-1|AAQ72373.1| 614|Homo sapiens synovial sarcoma, X bre... 28 6.9
>X81713-1|CAA57357.1| 109|Homo sapiens smallest subunit of TFIIA
protein.
Length = 109
Score = 168 bits (408), Expect = 4e-42
Identities = 79/103 (76%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 1 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 60
M+YQLYRNTT+GN+LQESLDELIQ QITP LA++VLLQFDK+IN AL+ RV++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKS 103
G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGK+
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
>U21242-1|AAB58247.1| 109|Homo sapiens transcription factor TFIIA
small subunit p12 protein.
Length = 109
Score = 168 bits (408), Expect = 4e-42
Identities = 79/103 (76%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 1 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 60
M+YQLYRNTT+GN+LQESLDELIQ QITP LA++VLLQFDK+IN AL+ RV++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKS 103
G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGK+
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
>U14193-1|AAA64951.1| 109|Homo sapiens transcription factor IIA
small 12 kDa subunit protein.
Length = 109
Score = 168 bits (408), Expect = 4e-42
Identities = 79/103 (76%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 1 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 60
M+YQLYRNTT+GN+LQESLDELIQ QITP LA++VLLQFDK+IN AL+ RV++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKS 103
G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGK+
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
>CR542192-1|CAG46989.1| 109|Homo sapiens GTF2A2 protein.
Length = 109
Score = 168 bits (408), Expect = 4e-42
Identities = 79/103 (76%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 1 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 60
M+YQLYRNTT+GN+LQESLDELIQ QITP LA++VLLQFDK+IN AL+ RV++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKS 103
G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGK+
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
>BT007362-1|AAP36026.1| 109|Homo sapiens general transcription
factor IIA, 2, 12kDa protein.
Length = 109
Score = 168 bits (408), Expect = 4e-42
Identities = 79/103 (76%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 1 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 60
M+YQLYRNTT+GN+LQESLDELIQ QITP LA++VLLQFDK+IN AL+ RV++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKS 103
G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGK+
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
>BC001919-1|AAH01919.1| 109|Homo sapiens general transcription
factor IIA, 2, 12kDa protein.
Length = 109
Score = 168 bits (408), Expect = 4e-42
Identities = 79/103 (76%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 1 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 60
M+YQLYRNTT+GN+LQESLDELIQ QITP LA++VLLQFDK+IN AL+ RV++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKS 103
G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGK+
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
>BC000287-1|AAH00287.1| 109|Homo sapiens general transcription
factor IIA, 2, 12kDa protein.
Length = 109
Score = 168 bits (408), Expect = 4e-42
Identities = 79/103 (76%), Positives = 93/103 (90%), Gaps = 1/103 (0%)
Query: 1 MSYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKA 60
M+YQLYRNTT+GN+LQESLDELIQ QITP LA++VLLQFDK+IN AL+ RV++R+ F+
Sbjct: 1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFR- 59
Query: 61 GKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKS 103
G LNTYRFCDNVWTF+LNDVEFREV EL KV+KVKIVACDGK+
Sbjct: 60 GSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
>BC064389-1|AAH64389.1| 559|Homo sapiens SSX2IP protein protein.
Length = 559
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 24 QYGQITPALAVKVLLQFDKSINQALSNRVK----SRLTFKAGKLNTYRFCDNVWTFMLND 79
+Y ++ L V+ + DK I + N V R +++ GK R D ++ +LND
Sbjct: 204 EYNKLKERLHQLVMNKKDKKIAMDILNYVGRADGKRGSWRTGKTEA-RNEDEMYKILLND 262
Query: 80 VEFREVQELAKVEKVKIVACDGKSEYV 106
E+R+ Q L + ++K V K E +
Sbjct: 263 YEYRQKQILMENAELKKVLQQMKKEMI 289
>BC033637-1|AAH33637.1| 614|Homo sapiens SSX2IP protein protein.
Length = 614
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 24 QYGQITPALAVKVLLQFDKSINQALSNRVK----SRLTFKAGKLNTYRFCDNVWTFMLND 79
+Y ++ L V+ + DK I + N V R +++ GK R D ++ +LND
Sbjct: 204 EYNKLKERLHQLVMNKKDKKIAMDILNYVGRADGKRGSWRTGKTEA-RNEDEMYKILLND 262
Query: 80 VEFREVQELAKVEKVKIVACDGKSEYV 106
E+R+ Q L + ++K V K E +
Sbjct: 263 YEYRQKQILMENAELKKVLQQMKKEMI 289
>BC014539-1|AAH14539.1| 468|Homo sapiens secretogranin III protein.
Length = 468
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 10 TIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKL 63
TI TL + + +++YG I+P V L D+ I N+++ T KL
Sbjct: 301 TIMKTLIDFVKMMVKYGTISPEEGVSYLENLDEMIALQTKNKLEKNATDNISKL 354
>BC009511-1|AAH09511.2| 233|Homo sapiens SCG3 protein protein.
Length = 233
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 10 TIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKL 63
TI TL + + +++YG I+P V L D+ I N+++ T KL
Sbjct: 66 TIMKTLIDFVKMMVKYGTISPEEGVSYLENLDEMIALQTKNKLEKNATDNISKL 119
>AY359093-1|AAQ89451.1| 468|Homo sapiens secretogranin protein.
Length = 468
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 10 TIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKL 63
TI TL + + +++YG I+P V L D+ I N+++ T KL
Sbjct: 301 TIMKTLIDFVKMMVKYGTISPEEGVSYLENLDEMIALQTKNKLEKNATDNISKL 354
>AF453583-1|AAL67431.1| 468|Homo sapiens secretogranin III protein.
Length = 468
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 10 TIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKL 63
TI TL + + +++YG I+P V L D+ I N+++ T KL
Sbjct: 301 TIMKTLIDFVKMMVKYGTISPEEGVSYLENLDEMIALQTKNKLEKNATDNISKL 354
>AB023140-1|BAA76767.2| 626|Homo sapiens KIAA0923 protein protein.
Length = 626
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 24 QYGQITPALAVKVLLQFDKSINQALSNRVK----SRLTFKAGKLNTYRFCDNVWTFMLND 79
+Y ++ L V+ + DK I + N V R +++ GK R D ++ +LND
Sbjct: 216 EYNKLKERLHQLVMNKKDKKIAMDILNYVGRADGKRGSWRTGKTEA-RNEDEMYKILLND 274
Query: 80 VEFREVQELAKVEKVKIVACDGKSEYV 106
E+R+ Q L + ++K V K E +
Sbjct: 275 YEYRQKQILMENAELKKVLQQMKKEMI 301
>Z81365-3|CAI43184.1| 913|Homo sapiens ubiquitin specific
peptidase 26 protein.
Length = 913
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 46 QALSNRVKSRLT--FKAGKLNTYRFCDNVWTFML 77
+A+ + K RL FK+GK +T+R DN+ +L
Sbjct: 28 EAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVL 61
>BC101191-1|AAI01192.1| 913|Homo sapiens ubiquitin specific
peptidase 26 protein.
Length = 913
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 46 QALSNRVKSRLT--FKAGKLNTYRFCDNVWTFML 77
+A+ + K RL FK+GK +T+R DN+ +L
Sbjct: 28 EAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVL 61
>BC101190-1|AAI01191.1| 913|Homo sapiens ubiquitin specific
peptidase 26 protein.
Length = 913
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 46 QALSNRVKSRLT--FKAGKLNTYRFCDNVWTFML 77
+A+ + K RL FK+GK +T+R DN+ +L
Sbjct: 28 EAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVL 61
>BC101189-1|AAI01190.1| 913|Homo sapiens ubiquitin specific
peptidase 26 protein.
Length = 913
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 46 QALSNRVKSRLT--FKAGKLNTYRFCDNVWTFML 77
+A+ + K RL FK+GK +T+R DN+ +L
Sbjct: 28 EAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVL 61
>BC069073-1|AAH69073.1| 913|Homo sapiens ubiquitin specific
peptidase 26 protein.
Length = 913
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 46 QALSNRVKSRLT--FKAGKLNTYRFCDNVWTFML 77
+A+ + K RL FK+GK +T+R DN+ +L
Sbjct: 28 EAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVL 61
>AF285593-1|AAK31972.1| 913|Homo sapiens ubiquitin specific
protease 26 protein.
Length = 913
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 46 QALSNRVKSRLT--FKAGKLNTYRFCDNVWTFML 77
+A+ + K RL FK+GK +T+R DN+ +L
Sbjct: 28 EAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVL 61
>AY367055-1|AAQ72373.1| 614|Homo sapiens synovial sarcoma, X
breakpoint 2 interacting protein protein.
Length = 614
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 24 QYGQITPALAVKVLLQFDKSINQALSNRVK----SRLTFKAGKLNTYRFCDNVWTFMLND 79
+Y ++ L V+ + DK I + N R +++ GK R D ++ +LND
Sbjct: 204 EYNKLKERLHQLVMNKKDKKIAMDILNYAGRADGKRGSWRTGKTEA-RNEDEMYKILLND 262
Query: 80 VEFREVQELAKVEKVKIVACDGKSEYV 106
E+R+ Q L + ++K V K E +
Sbjct: 263 YEYRQKQILMENAELKKVLQQMKKEMI 289
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.320 0.134 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,434,976
Number of Sequences: 224733
Number of extensions: 378734
Number of successful extensions: 707
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 21
length of query: 109
length of database: 73,234,838
effective HSP length: 79
effective length of query: 30
effective length of database: 55,480,931
effective search space: 1664427930
effective search space used: 1664427930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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