GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005169-TA|BGIBMGA005169-PA|IPR009088|Transcription
factor IIA, beta-barrel, IPR009083|Transcription factor IIA, helical,
IPR003194|Transcription initiation factor IIA, gamma subunit
         (109 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   1.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   3.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   3.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.4  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   5.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   5.8  

>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 69 CDNVWTFMLNDVEFREVQELAKVE 92
          C N  T     ++ R+VQE+ K E
Sbjct: 13 CVNAMTIEELKIQLRDVQEICKAE 36


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 58  FKAGKLNTYRFCDNVWTF 75
           FK   LNT    DNV+ F
Sbjct: 475 FKEANLNTRMLNDNVFAF 492


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 58  FKAGKLNTYRFCDNVWTF 75
           FK   LNT    DNV+ F
Sbjct: 475 FKEANLNTRMLNDNVFAF 492


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
          kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 83 REVQELAKVEKVKIV 97
          RE+QEL +V+  KIV
Sbjct: 5  RELQELLRVKDEKIV 19


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 69 CDNVWTFMLNDVEFREVQELAKVE 92
          C N  T     ++  +VQE+ K E
Sbjct: 13 CVNAMTIEELKIQLHDVQEICKTE 36


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 69  CDNVWTFMLNDVEFREVQELAKVE 92
           C++ W  + N V FR + +  K++
Sbjct: 380 CEHRWRQIYNMVRFRNLVKGTKID 403


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,536
Number of Sequences: 429
Number of extensions: 912
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 109
length of database: 140,377
effective HSP length: 50
effective length of query: 59
effective length of database: 118,927
effective search space:  7016693
effective search space used:  7016693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)