Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005168-TA|BGIBMGA005168-PA|IPR011545|DEAD/DEAH box
helicase, N-terminal, IPR001650|Helicase, C-terminal, IPR012961|DSH,
C-terminal, IPR014021|Helicase superfamily 1 and 2 ATP-binding,
IPR014001|DEAD-like helicases, N-terminal
(1243 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 553 e-158
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 446 e-126
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 419 e-117
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 84 1e-16
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 62 5e-10
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 61 8e-10
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 44 2e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.009
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 36 0.035
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 35 0.082
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.082
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 34 0.14
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.76
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 30 1.8
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 30 1.8
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 30 2.3
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 30 2.3
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 29 4.1
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 5.4
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 5.4
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 28 7.1
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 28 7.1
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 28 7.1
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 28 7.1
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 28 7.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 7.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 7.1
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 28 7.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 7.1
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 28 9.4
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 553 bits (1365), Expect = e-158
Identities = 272/511 (53%), Positives = 358/511 (70%), Gaps = 26/511 (5%)
Query: 269 EWAEMIDVSKPVPEFRDKIKDMAHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVV 328
++A ++D S P+ F+ + +MA +PFELDNFQK+AI LE G VFVAAHTSAGKTVV
Sbjct: 252 DYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVV 311
Query: 329 AEYAIAMSRRNYTRAIYTSPIKALSNQKYNDFNKLFGDVGLLTGDLQINATASCLVMTTE 388
AEYAIA+++++ T+AIYTSPIKALSNQK+ DF F DVG+LTGD+Q+N SCL+MTTE
Sbjct: 312 AEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTE 371
Query: 389 ILRSMLYCGSDVVRDLEFVIFDEVHYINNVERGYVWEEVLILLPSHVRIVMLSATVPNTL 448
ILRSMLY G+D++RD+EFVIFDEVHY+N++ERG VWEEV+I+LP HV +++LSATVPNT
Sbjct: 372 ILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTK 431
Query: 449 QFADWVGRTKKRKVFVVSTPKRPVPLCHYLYTGSGGKSKNERFKVVDQEGNFLLRGY--- 505
+FA WVGRTKK+ ++V+ST KRPVPL HYL+ K FK+VDQ G FL+ GY
Sbjct: 432 EFASWVGRTKKKNIYVISTLKRPVPLEHYLWV------KQNMFKIVDQHGRFLMDGYKSA 485
Query: 506 NEAL------AAKKSRENDYKKNFGPKG-----------GKQYMNPKAEQTMWVAFIDHL 548
N+AL K +N + +G G + + WV I HL
Sbjct: 486 NDALKKPDKPVIAKDNKNSARGRGAARGRGVQTNMMRGRGSAKSVERRDANTWVHLIGHL 545
Query: 549 KQNDKLPIVAFTLSRNRCDQNAENLMSVDLTTAKEKSHIRSFFQRCLQRLKEPDRKLPQV 608
+ + LP++ F S+ RC++ + L + DL +EKS + ++ + RLK+ DR LPQ+
Sbjct: 546 HKQNLLPVIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQI 605
Query: 609 LRLQRVLENGIGVHHSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNMPARTVVFDEI 668
R++ +L G+ VHH G+LP++KEIVE+LFQ G VK+LFATETFAMGVNMPA++VVF
Sbjct: 606 GRMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGT 665
Query: 669 TKFDGVERRTLAPAEYIQMAGRAGRRGLDDTGTVIILCKESVPDLVTLKGMLLGTPQKLS 728
K DG R L P EY Q +GRAGRRGLD TGTVIIL + +PD +L+ M++G KL
Sbjct: 666 QKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLI 725
Query: 729 SQFRLTYAMILSLLRAATVSVEGMMQRSFCE 759
SQFRLTY MIL+LLR T+ +E M++RSF E
Sbjct: 726 SQFRLTYNMILNLLRVETLRIEDMIKRSFSE 756
Score = 168 bits (408), Expect = 5e-42
Identities = 99/255 (38%), Positives = 140/255 (54%), Gaps = 5/255 (1%)
Query: 984 EILQALDKLKTLSTELEAHKKFTDIANFKSEFAVVYERKQAERKRDKYKRLLSFENLSLY 1043
E +A +K L +L + NF + FA+ Y+ + E D +S +NL L
Sbjct: 959 EFCEAFEKRNFLQNKLSGNP-IISTPNFLTHFALAYQEYELESNIDNLSSYISDQNLELL 1017
Query: 1044 PDYQRRLLVLRELSYIDEHDSVILKGRVACGMG-TNELIISELIFRNVFADKTPAEIAAL 1102
PDY++R+ VL+EL YID +V+LKGRVAC + T+EL+++ELI N AD + E AL
Sbjct: 1018 PDYEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEETIAL 1077
Query: 1103 LSCFVFQARTQVTNPLTEKLTEGVKXXXXXXXXXXXXXXKYLVSHF-EGQ--AERLNFGL 1159
LS FVF +T+V ++ L +G + Y V +F EG + FGL
Sbjct: 1078 LSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFGL 1137
Query: 1160 VRVVYEWALEKPFAEIMDLTDVQEGIIVRCIQQLHELLVDVKDASVAIGDPKLQSKMMEA 1219
+ V YEWA F I DLTDV EG IVR I +L E+L + + A+ +GD + +KM E
Sbjct: 1138 MEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKMEEC 1197
Query: 1220 STSIKRDIVFAASLY 1234
I+R+IVF SLY
Sbjct: 1198 QNLIRRNIVFCPSLY 1212
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 446 bits (1100), Expect = e-126
Identities = 254/615 (41%), Positives = 365/615 (59%), Gaps = 31/615 (5%)
Query: 189 NIKINLEEIVENNVHLVDLWKDDSEQPQKPKTPSHIEVATDEIENE-NFLEETVVKPPVE 247
N+K N + I N+V+ + + ++S P ++A D+I NE + E P
Sbjct: 74 NLKDNQDLIPNNDVNGIHI--NNSAVADTKHKPKIGDIAADDISNEVSIKNEGDTIPEAT 131
Query: 248 LPEIPVLDITSSV-GKLGVTSTEWA--EMID--------VSKP-----VPEFRDKIK-DM 290
+ + + + V GK+G+T + + E+++ VS P VP + K
Sbjct: 132 VADSFEQEASLQVAGKVGMTEAKSSTEEVVELRHQVRHQVSIPPNYDYVPISKHKSPIPP 191
Query: 291 AHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNYTRAIYTSPIK 350
A +YPF LD FQ +I +E V V+AHTSAGKTVVAEYA+A S R+ R IYTSPIK
Sbjct: 192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIK 251
Query: 351 ALSNQKYNDFNKLFGDVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVVRDLEFVIFD 410
ALSNQKY + FGDVGL+TGD+ IN A+CLVMTTEILRSMLY GS+V+R++ +VIFD
Sbjct: 252 ALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFD 311
Query: 411 EVHYINNVERGYVWEEVLILLPSHVRIVMLSATVPNTLQFADWVGRTKKRKVFVVSTPKR 470
E+HY+ + ERG VWEE +ILLP V LSAT+PN +QFA+W+ + ++ VV T R
Sbjct: 312 EIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFR 371
Query: 471 PVPLCHYLY-TGSGGKSKNERFKVVDQEGNFLLRGYNEALAAKKSRENDYKKNFGPKG-- 527
P PL HYL+ +GS G VVD++ NF + A++A ++ D KG
Sbjct: 372 PTPLQHYLFPSGSDG-----IHLVVDEKSNFREENFQRAMSALMEKQGDDPAAMATKGNA 426
Query: 528 --GKQYMNPKAEQTMWVAFIDHLKQNDKLPIVAFTLSRNRCDQNAENLMSVDLTTAKEKS 585
GK + + + + P++ F+ S+ C+ A + +D+ E+
Sbjct: 427 KKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMNDQTERD 486
Query: 586 HIRSFFQRCLQRLKEPDRKLPQVLRLQRVLENGIGVHHSGILPLLKEIVEMLFQTGFVKI 645
+ + F + +L E DR+LPQ+ + +L GIG+HHSG+LP+LKE++E+LFQ G +K+
Sbjct: 487 LVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEVIEILFQEGLLKV 546
Query: 646 LFATETFAMGVNMPARTVVFDEITKFDGVERRTLAPAEYIQMAGRAGRRGLDDTGTVIIL 705
LFATETF++G+NMPA+TVVF + KFDG R ++ EYIQM+GRAGRRGLDD G VI++
Sbjct: 547 LFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVILM 606
Query: 706 CKESVPDLVTLKGMLLGTPQKLSSQFRLTYAMILSLLRAATVSVEGMMQRSFCEFNQICQ 765
E + D K ML G +L S F L+Y MIL+LLR +S E M++R F +F +
Sbjct: 607 IDEKM-DPPVAKSMLKGEADRLDSAFHLSYNMILNLLRVEGISPEFMLERCFFQFQNSLE 665
Query: 766 ADNYRRQLEVAEKEY 780
+LE +++ Y
Sbjct: 666 VPKLEAKLEESQQHY 680
Score = 128 bits (309), Expect = 5e-30
Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 7/263 (2%)
Query: 977 SLAISTGEILQALDKLKTLSTELEAHKKFTDIANFKSEFAVVYERKQA--ERKRDKYKRL 1034
++ I ++ + K+ L + L ++ + + + ++A Y RK A E +D K+L
Sbjct: 856 NMNIKEPTFIKLMKKVNILESRLLSNP-LHNFSELEEKYAE-YLRKLALLEEVKDLKKKL 913
Query: 1035 LSFENLSLYPDYQRRLLVLRELSYIDEHDSVILKGRVACGMGTNE-LIISELIFRNVFAD 1093
++ + R VLR L + D + +KGRVAC + + + L+++ELIF +F D
Sbjct: 914 SKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFND 973
Query: 1094 KTPAEIAALLSCFVFQARTQVTNP-LTEKLTEGVKXXXXXXXXXXXXXXKYLVS-HFEGQ 1151
TP + AALLSC VFQ +++V N + E+L +K + + E
Sbjct: 974 LTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELNEEEY 1033
Query: 1152 AERLNFGLVRVVYEWALEKPFAEIMDLTDVQEGIIVRCIQQLHELLVDVKDASVAIGDPK 1211
L+ VVY WA FA+I +TDV EG ++R ++L EL+ + DA+ IG+
Sbjct: 1034 VNSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGNTS 1093
Query: 1212 LQSKMMEASTSIKRDIVFAASLY 1234
LQ KM + I RDIVF+ASLY
Sbjct: 1094 LQQKMEDTIACIHRDIVFSASLY 1116
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 419 bits (1031), Expect = e-117
Identities = 230/597 (38%), Positives = 342/597 (57%), Gaps = 26/597 (4%)
Query: 291 AHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNYTRAIYTSPIK 350
A +YPFELD FQ AI +E V V+AHTSAGKTV+AEYAIA + +N R IYTSPIK
Sbjct: 119 AKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIK 178
Query: 351 ALSNQKYNDFNKLFGDVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVVRDLEFVIFD 410
+LSNQKY + FGDVGL+TGD+ IN +ASCL+MTTEILR+MLY S+++ ++ +VIFD
Sbjct: 179 SLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFD 238
Query: 411 EVHYINNVERGYVWEEVLILLPSHVRIVMLSATVPNTLQFADWVGRTKKRKVFVVSTPKR 470
EVHY+ + +RG VWEE LILLP +R + LSAT+PN LQFA W+ K+ VV T R
Sbjct: 239 EVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYR 298
Query: 471 PVPLCHYLYTGSGGKSKNERFKVVDQEGNFLLRGYNEALAAKKSRENDYKKNFGPKGGKQ 530
P PL H++Y + + + +VD++ F + + L + ++N+ K
Sbjct: 299 PTPLQHFIYP----QGADGIYMLVDEKNKFKTENFKKVLEVLD--HSTRQENYSKSSKKV 352
Query: 531 YMNPKAEQTMWVAFIDHLKQNDKLPIVAFTLSRNRCDQNAENLMSVDLTTAKEKSHIRSF 590
+ E+ I+ + N PI+ F S+ C+ NA +DL + K +
Sbjct: 353 KKSSSLER-----IINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEI 407
Query: 591 FQRCLQRLKEPDRKLPQVLRLQRVLENGIGVHHSGILPLLKEIVEMLFQTGFVKILFATE 650
F + +L E DR L Q ++ +L GIG+HHSG+LP+LKE+VE+LFQ G V+ILFATE
Sbjct: 408 FDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATE 467
Query: 651 TFAMGVNMPARTVVFDEITKFDGVERRTLAPAEYIQMAGRAGRRGLDDTGTVIILCKESV 710
TF++G+NMPARTV+F + KF G R L EY+QM+GRAGRRG+D G I++ +S+
Sbjct: 468 TFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSI 527
Query: 711 PDLVTLKGMLLGTPQKLSSQFRLTYAMILSLLRAATVSVEGMMQRSFCEFNQICQADNYR 770
D + ++ G L+S F L+Y MIL+L+R +S E ++++SF +F + +
Sbjct: 528 -DEQAARCLMNGQADVLNSAFHLSYGMILNLMRIEEISPEDILKKSFYQFQNMESLPLIK 586
Query: 771 RQLEVAEKEYSEKCXXXXXXXXXXXXXFYETAAAYLDVLNEIMPILLNQSKVAKELDAGK 830
+L + E + F++ EI ++ + L +G+
Sbjct: 587 EELMQLKNEET----SINIPNETAVKEFHDLKLQLEKYGEEIQKVMTHPDNCLPYLQSGR 642
Query: 831 ILLVSAGPYINQLAVYLN--------NSGPRQTPYKVLVLNT--PIQDSSRYNFEID 877
++ + G I V +N N+ + P++ VL+ PI +S N +++
Sbjct: 643 LIQIKLGGIIFPWGVLVNVIKREFDPNTREQVAPHETYVLDVLLPISSNSMSNHKVN 699
Score = 92.3 bits (219), Expect = 4e-19
Identities = 69/259 (26%), Positives = 127/259 (49%), Gaps = 5/259 (1%)
Query: 980 ISTGEILQALDKLKTLSTELEAHKKFTDIANFKSEFAVVYERKQAERK-RDKYKRLLSFE 1038
I + + +L KL+ L +L + D + ++E+ ++ + +D ++ + E
Sbjct: 772 IESSTLSLSLRKLEILEPKLFDSPYYKD-SKHRAEYHEFRKKLNLRAQIKDISTKITNTE 830
Query: 1039 NLSLYPDYQRRLLVLRELSYIDEHDSVILKGRVACGMGT-NELIISELIFRNVFADKTPA 1097
+ + + R VLR L + + + +KGRVAC + + +EL++ ELIF+ F P
Sbjct: 831 AIIQLRELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPE 890
Query: 1098 EIAALLSCFVFQARTQV-TNPLTEKLTEGVKXXXXXXXXXXXXXXKYLVSHFEGQ-AERL 1155
EIAA LSCFV++ +++V T L E + + + E +
Sbjct: 891 EIAAALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQF 950
Query: 1156 NFGLVRVVYEWALEKPFAEIMDLTDVQEGIIVRCIQQLHELLVDVKDASVAIGDPKLQSK 1215
++ V W F EI ++ + EG IVR ++L ELL ++ A++ +G+ +L+ K
Sbjct: 951 KPDIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEK 1010
Query: 1216 MMEASTSIKRDIVFAASLY 1234
+ + RDI+F+ASLY
Sbjct: 1011 SVLTEQKLHRDIIFSASLY 1029
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 83.8 bits (198), Expect = 1e-16
Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 296 FELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNYTR--AIYTSPIKALS 353
F+ D +Q++ + L+ VFV A TS+GKT ++ YA+ R+ IY +P KAL
Sbjct: 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793
Query: 354 NQ----KYNDFNKLFGDVG-----LLTGDLQINATASCLVMTT--EILRSMLY---CGSD 399
NQ Y FNK + G + T D +IN +C V+ T +L+SML +
Sbjct: 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANA 853
Query: 400 VVRDLEFVIFDEVHYINNVERGYVWEEVLILLPSHVRIVMLSATVPNTLQFADWVGRTKK 459
+ +IFDE+H I +E G V E++L+L P IV LSATV N +F W+ ++
Sbjct: 854 WCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAP--CPIVALSATVGNPQEFQVWLSALQR 911
Score = 79.4 bits (187), Expect = 3e-15
Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 615 LENGIGVHHSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNMPARTVVFDEITKFDGV 674
L GIG+HHSG+ ++IVE+LF+ G + ++ AT T ++G+NMP RTVVF D +
Sbjct: 1221 LYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVF----LGDSL 1276
Query: 675 ERRTLAPAEYIQMAGRAGRRGLDDTGTVIILCKESVPDLVTLKGMLLGTPQKLSSQFRLT 734
+ L + Q AGRAGRRG D G V L VP L + +L + QF LT
Sbjct: 1277 QLNAL---NFHQAAGRAGRRGFDLLGHVGFL---GVP-LHKIYRLLTTKLWDIQGQFPLT 1329
Query: 735 YAMILSLLRAATVSVEGMMQR 755
+++L L + + S G R
Sbjct: 1330 TSLVLQLSQLISGSQAGPFAR 1350
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 62.1 bits (144), Expect = 5e-10
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 611 LQRVLENGIGVHHSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNMPARTVVFDEITK 670
L+ +L G +HH+G+ ++ E LF G +++L +T T A GVN+PA TV+ + T+
Sbjct: 813 LKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVII-KGTQ 871
Query: 671 FDGVER---RTLAPAEYIQMAGRAGRRGLDDTGTVIILCKES 709
E+ L+P + +QM GRAGR D G II+ S
Sbjct: 872 VYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHS 913
Score = 60.9 bits (141), Expect = 1e-09
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 315 VFVAAHTSAGKTVVAEYAIA--MSRRNYTRAIYTSPIKALSNQKYNDFNKLFGDVG---- 368
VF+ A +GKTV AE A+ S+ +Y A+Y +PI+ + +++Y ++ F D+G
Sbjct: 1383 VFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKV 1442
Query: 369 --LLTG----DLQINATASCLVMTTEILRSM--LYCGSDVVRDLEFVIFDEVHYINNVER 420
LTG DL++ A + T S+ + ++ ++F I DE+ +
Sbjct: 1443 LVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGF-Y 1501
Query: 421 GYVWEEVL-------ILLPSHVRIVMLSATVPNTLQFADWVGRTKKRKVFVVSTPKRPVP 473
G ++E V+ + L ++R+V LS +V N +W+G T + +F S RP P
Sbjct: 1502 GPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLG-TSPQCIFNFSPKDRPNP 1560
Query: 474 LCHYLYTGS 482
L +L + S
Sbjct: 1561 LTIHLQSFS 1569
Score = 58.0 bits (134), Expect = 8e-09
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 314 HVFVAAHTSAGKTVVAEYAIAMSRRNYTRA-----------IYTSPIKALSNQKYNDFNK 362
++ + A T AGKT VA I + + R +Y +P+KAL + N+F+K
Sbjct: 537 NILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 363 LFGDVGL----LTGDLQIN----ATASCLVMTTEILRSMLYCGSDV--VRDLEFVIFDEV 412
+ LTGD Q+ + +V T E + +D+ V + VI DEV
Sbjct: 597 RLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEV 656
Query: 413 HYINNVERGYVWEEVLILLPSH-------VRIVMLSATVPNTLQFADWVGRTKKRKVFVV 465
H +++ ERG V E ++ + H VR+V LSAT+PN A ++ K+ +F
Sbjct: 657 HLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYF 715
Query: 466 STPKRPVPL 474
+ RP PL
Sbjct: 716 DSTYRPCPL 724
Score = 34.7 bits (76), Expect = 0.082
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 611 LQRVLENGIGVHHSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNMPARTVVFDEITK 670
LQ+ L++GI + IV+ L++ G +K+L A+ + + V+
Sbjct: 1644 LQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQY 1703
Query: 671 FDGVERRTL--APAEYIQMAGRAGRRGLDDTGTVIIL 705
+DG E R + +E +QM G G + VI++
Sbjct: 1704 YDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILM 1740
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 61.3 bits (142), Expect = 8e-10
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 20/168 (11%)
Query: 338 RNYTRAIYTSPIKALSNQKYNDFNKLFGDVGL----LTGDLQINAT----ASCLVMTTE- 388
R+ + +Y +P+KAL+ + K +GL LTGD+Q+ T LV T E
Sbjct: 338 RDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEK 397
Query: 389 --ILRSMLYCGSDVVRDLEFVIFDEVHYINNVERGYVWEEVLI----LLPSH---VRIVM 439
++ + + + VI DEVH +++ ERG V E ++ L+ + +RIV
Sbjct: 398 WDVVTRKSVGDTQLAEKVRLVIIDEVHMLHD-ERGAVIESLVARTQRLVETSQQMIRIVG 456
Query: 440 LSATVPNTLQFADWVGRTKKRKVFVVSTPKRPVPLCHYLYTGSGGKSK 487
LSAT+PN L AD++G + + +F S+ RP P+ + + G+ G K
Sbjct: 457 LSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQH-FIGAKGSPK 503
Score = 60.5 bits (140), Expect = 1e-09
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 27/187 (14%)
Query: 314 HVFVAAHTSAGKTVVAEYAIAMSRRNY--TRAIYTSPIKALSNQKYNDF-NKLFGDVGL- 369
++FV A T +GKT+ AE A + NY ++ +Y +P+KAL ++ D+ ++L +G+
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGIS 1211
Query: 370 ---LTG----DLQINATASCLVMTTE----ILRSMLYCGSDVVRDLEFVIFDEVHYINNV 418
LTG D++ A+ ++ T E I RS + V+D+ +I DE+H + +
Sbjct: 1212 MIELTGDTNPDVKAVTNANIIITTPEKWDGITRS--WKSRKYVQDVSLIILDEIHLLGS- 1268
Query: 419 ERGYVWEEVLILL-------PSHVRIVMLSATVPNTLQFADWVGRTKKRKVFVVSTPKRP 471
+RG V E ++ + VR++ LS V N A+W+ + +F RP
Sbjct: 1269 DRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWL--NIRDGLFNFRHSVRP 1326
Query: 472 VPLCHYL 478
VPL Y+
Sbjct: 1327 VPLEIYI 1333
Score = 58.8 bits (136), Expect = 4e-09
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 611 LQRVLENGIGVHHSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNMPARTVVFDEITK 670
L+ L GI +HH+G+ ++I E LF V+IL AT T A GVN PA V+
Sbjct: 1415 LKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEY 1474
Query: 671 FDGV--ERRTLAPAEYIQMAGRAGRRGLDDTGTVIILCKE 708
+D + + + +QM GRAGR D++G I ++
Sbjct: 1475 YDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQD 1514
Score = 55.6 bits (128), Expect = 4e-08
Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Query: 524 GPKGGKQYMNPKAEQTMWVAFIDHLKQNDKLPIVAFTLSRNRCDQNAENLMSVDLTTAKE 583
G KG + +N ++ + + +++ ++ I F SR +A+ L + +
Sbjct: 497 GAKGSPKIVNSNIDEACFDKVLKLIQEGHQVMI--FVHSRKETINSAKKLR--EQFFHEG 552
Query: 584 KSHIRSFFQRCLQRLKEPDRKLPQVLRLQRVLENGIGVHHSGILPLLKEIVEMLFQTGFV 643
++ + Q L + D + L+ + + +G+H++G+L + + E LF G +
Sbjct: 553 EADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGIL 612
Query: 644 KILFATETFAMGVNMPARTVVFDEITKFDGVERR--TLAPAEYIQMAGRAGRRGLDDTGT 701
KIL T T A GVN+PA V+ +D + L + +Q+ GRAGR + +
Sbjct: 613 KILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAV 672
Query: 702 VIIL 705
I+
Sbjct: 673 AYII 676
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 645 ILFATETFAMGVNMPARTVVFDEITKFDGVERRTLAPAEYIQMAGRAGR 693
IL A++ MG+N+ + +VF ++ KF GV + + Q+AGRAGR
Sbjct: 391 ILLASDAIGMGLNLGVKRIVFSDLKKFSGVSTIDIPVPQIKQIAGRAGR 439
Score = 27.9 bits (59), Expect = 9.4
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 313 HHVFVAAHTSAGKTVVAEYAIAMSRRNYTRAIYTSPIKALSNQKYNDFNKLFGDVGLLTG 372
H + T++GKT A + ++ I+ P++ L+++ YN L TG
Sbjct: 173 HIIMHVGPTNSGKTHRALERLKTCKKG----IFAGPLRLLAHEIYNRLQANGIACNLYTG 228
Query: 373 DLQINATASCLVMTTEILRSMLYCGSDVVRDLEFVIFDEVHYINNVERGYVWEEVLI 429
+ N V++ + L DV + DE+ + + RGY W + L+
Sbjct: 229 EEIRNDYPFPQVVSCTVEMCNLSTTFDVA------VIDEIQMMADPSRGYAWTQCLL 279
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.9 bits (84), Expect = 0.009
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 302 QKQAILKLEEGHHVFVAAHTSAGKTV-----VAEYAIAMSRRNYTRAIYTSPIKALSNQK 356
Q++ I L EG V A T +GKT + E+ + + TRA+ SP + L+ Q
Sbjct: 96 QRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQT 155
Query: 357 YN---DFNK--------LFGDVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVVRDLE 405
DF+K + G V L ++ +V T + + +E
Sbjct: 156 VKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIE 215
Query: 406 FVIFDEVHYINNVERGYVWEEVLILLPSHVRIVMLSATVPNTL 448
+V+FDE + + E+L LP+ + ++ SAT+P TL
Sbjct: 216 YVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTL 258
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 35.9 bits (79), Expect = 0.035
Identities = 61/239 (25%), Positives = 96/239 (40%), Gaps = 25/239 (10%)
Query: 230 EIENENFLEETVVKPPVELPEIPVLD--ITSSVGKLGVTSTEWAEMIDVSKPVPEFRDKI 287
E ENE+ + T V+ E + D + SV L +ST E + + I
Sbjct: 46 EEENEDADQNTSVESESEELDNENEDERVQKSVN-LNASSTSDIEKFSDLQLSENIQKAI 104
Query: 288 KDMAHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGK-------TVVAEYAIAMSRRNY 340
K+M E+ QK++I L G V AA T +GK T+ YA+ RN
Sbjct: 105 KEMGFETMTEI---QKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNG 161
Query: 341 TRAIYTSPIKALSNQKYNDFNKLF----GDVGLLTGDLQINATASCLVMTTEIL-----R 391
T I SP + L+ Q + +L G++ G A A LV +L R
Sbjct: 162 TGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGR 221
Query: 392 SMLYCGSD---VVRDLEFVIFDEVHYINNVERGYVWEEVLILLPSHVRIVMLSATVPNT 447
+ + + V R+L ++ DE I + +++ +LPS R +L + T
Sbjct: 222 LLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTT 280
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 34.7 bits (76), Expect = 0.082
Identities = 34/163 (20%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 302 QKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNYTR---AIYTSPIKALSNQKYN 358
Q++AI + V A T +GKT + N A+ +P + L+ Q
Sbjct: 73 QQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISE 132
Query: 359 DFNKLFGDVGL----LTGDLQINATASCLVMTTEIL-----RSMLYCGSDV---VRDLEF 406
F + G +G+ + G + + A L +L R M + + +++L++
Sbjct: 133 QFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKY 192
Query: 407 VIFDEVHYINNVERGYVWEEVLILLPSHVRIVMLSATVPNTLQ 449
+I DE + +++ G + +++L ++P R ++ SAT+ + ++
Sbjct: 193 LIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVE 235
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 34.7 bits (76), Expect = 0.082
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 614 VLENGIGVH----HSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNMPARTVVFDEIT 669
VLEN + + HSG+ + + F+ ILFAT+ A G++ P T V +IT
Sbjct: 311 VLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVV-QIT 369
Query: 670 KFDGVERRTLAPAEYIQMAGRAGRRGLDDTG-TVIILCKESVPDLVTLKGMLL--GTPQK 726
+ +YI GR GR G TG +IL ++ P L ++K + L T +
Sbjct: 370 GPSNTD-------DYIHRIGRTGRAG--KTGEAYLILLEQEKPFLNSIKHLPLKRATIEP 420
Query: 727 LSSQ 730
LS Q
Sbjct: 421 LSDQ 424
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 302 QKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMS--RRNYTRAIYTSPIKALSNQK 356
Q AI L G HV V+ TS+GK+++ + I S N + A + P K+L+ +
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSLAQDQ 372
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 622 HHSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNM-PARTVVFDEITKFDGVERRTLA 680
+H+G+ + ++ ++ +Q+G KI+ AT F MGV+ R V+ K +
Sbjct: 773 YHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPK---------S 823
Query: 681 PAEYIQMAGRAGRRG 695
Y Q GRAGR G
Sbjct: 824 LEGYYQETGRAGRDG 838
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 985 ILQALDKLKTLSTELEAHKKFTDIANFKSEFAVVYERKQAERKRDKYKRLLSF--ENLSL 1042
+ + L+ L+ +S + + K+ +DI N K E + V AE+ R + +R ++ N L
Sbjct: 333 VQRKLNDLRDMSKYVLSEKEVSDIINRKKELSRVPSNIAAEKTRLRQRRQAAYVAGNAEL 392
Query: 1043 YPDYQRRLLVLRELS 1057
+ +L L ELS
Sbjct: 393 VKEIDDQLNTLEELS 407
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 30.3 bits (65), Expect = 1.8
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 6/154 (3%)
Query: 321 TSAGKTVVAEYA-IAMSRRNYTRAIYTSPIKALSNQKYNDFNKLFGDVGLLTGDLQI--N 377
T G +VA +A N T+ + +L K + G G LT DL
Sbjct: 71 TGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFRE 130
Query: 378 ATASCLVMTTEILRSMLYCGSDVVRDLEFVIFDEVHYINNVERGYVWEEVLILLPSHVRI 437
S ++ T L ML S + LE +I DE + ++ + ++ LP R
Sbjct: 131 KNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRT 188
Query: 438 VMLSATVPNTL-QFADWVGRTKKRKVFVVSTPKR 470
+ SAT+ +T+ F G +V V T K+
Sbjct: 189 GLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKK 222
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.9 bits (64), Expect = 2.3
Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 619 IGVHHSGILPLLKEIVEMLFQTGFVKILFATETFAMGVNMPARTVVFDEITKFDGVERRT 678
+GV H + +E F+ G + +L AT+ A G++ +V + FD +
Sbjct: 315 VGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVIN----FDFPQ--- 367
Query: 679 LAPAEYIQMAGRAGRRGLDDTG-TVIILCKESVPDLVTLKGMLLGTPQKLSSQFRLTYAM 737
+ YI GR GR G +TG V KE + + G++ + ++ +
Sbjct: 368 -SVHSYIHRIGRTGRAG--NTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPN-------W 417
Query: 738 ILSLLRAATVSVEGMMQRSFCEFNQICQADNYRRQLEVAEKEYSEK 783
+++L + + ++ +++S + +I +Y RQ E +KEY +K
Sbjct: 418 VMALPKPSK-EMKKKLKKSPPKRKRITTRASYDRQKEQRKKEYIKK 462
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 29.9 bits (64), Expect = 2.3
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 608 VLRLQRVLENGIGVHHSGILPLLKEIVEML--FQTGFVKILFATETFAMGVNMPARTVVF 665
+ + R+LE + HS ++ +E + L F+ KIL AT+ + G+++P+ +V
Sbjct: 274 IYSILRLLELRVTELHSEMVQ--RERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVI 331
Query: 666 DEITKFDGVERRTLAPAEYIQMAGRAGRRGLDDTGTVIILCKESVPDLVTLKGMLLGTPQ 725
+ FD + R P +YI GR R G +G I + E DLV +GT
Sbjct: 332 N----FD-LPR---DPDDYIHRVGRTARAG--RSGESISIVTERDVDLVHAIEDRVGT-- 379
Query: 726 KLSSQFRLTYAMILSLLRAAT-----VSVEGMMQRSFCEFNQ 762
KLS ++ +L ++ T S+E M+ R F E Q
Sbjct: 380 KLSEYEHVSENKMLEYIKEVTDAKRQASLE-MIDRGFGERRQ 420
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 140 DVPGKFLGEDILTVAPGCKDSVLFAEDGFTLLNEGKPEDKPDDIEDVDINIKINLEEIVE 199
D+P G I+T P +DS D G E D+ E DI++ + EE E
Sbjct: 112 DIPVYLSGTCIITNIPEEEDSSDLENDFLY----GADEFSSDEEEMDDISVTSSEEEEEE 167
Query: 200 NNVHLVDLWKDDSEQPQKPKTPSHIEVATDEIENEN 235
N + +L D+ + Q + V DE+ ++
Sbjct: 168 NGARIEELNSDEEDAEQAEEEILEKPVPKDEVAEKH 203
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 146 LGEDILTVAPGCKDSVLFAEDGFTLLNEGKPEDKPDDIEDVDINIKINLEEIVENNVHLV 205
+G D ++ + L + ++ N+G P + D+E + ++ N EE + +N LV
Sbjct: 803 IGNDAISTTRKTVRAFLENANPYSTNNDGNPSNNTSDVEVNETSMNDNSEEPISSN-WLV 861
Query: 206 DLWK 209
DL++
Sbjct: 862 DLFQ 865
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 595 LQRLKEPDRKLPQVLRLQRVLENGIGVHHS 624
L+ LKE KL + R +R+L +GI HS
Sbjct: 346 LEELKEQTNKLYEAYRTERLLSSGISQDHS 375
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 28.3 bits (60), Expect = 7.1
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 360 FNKLFGDVGLLTGD-------LQINATASCLVMTTEILRSMLYCGSDVVRDLEFVIFDEV 412
F+ LFG+VG TGD ++++ + E L G+ D+E +F V
Sbjct: 341 FSNLFGNVGFFTGDSIVSKNPIELDDEDYEFMQGFESAAGKLAEGT-AFHDIERSLFTIV 399
Query: 413 HYINNVERGYVWEEVLILLP 432
+ RG+ W+E LLP
Sbjct: 400 PSRPHFPRGFYWDEGFHLLP 419
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 957 RMSHAARAGAVQLERINLTHSLAISTGEILQALDKLKTLSTELEAHKKFTDIANFKSEFA 1016
R +HAA + + N+ L ST E+LQ D + +L + E + I+N +
Sbjct: 320 RNAHAATGKRKKSDGRNVGRKLVNSTYEVLQGFDAVDSLIAKCERYGAM--ISNTMRSWH 377
Query: 1017 VVYERKQAERKRDKYKRLLSFENLSLYP 1044
+++ K+ E+ + +S+E S P
Sbjct: 378 NLFDDKKMEQFLNTSTGSISYEYNSQQP 405
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 255 DITSSVGKLGVTSTEWAEMIDVSKPV-PEFRDKIKDMAHSYPFELDNFQKQAILKLEEGH 313
++ SSV L + S A+ D P+ P+ D +++ ++ E+D +KQ EE
Sbjct: 990 NLMSSVDTLSILSKWAAQQQDSRLPINPKLPDILQEEINNVVAEVDMLKKQEASLKEERT 1049
Query: 314 HVF 316
H+F
Sbjct: 1050 HLF 1052
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 7.1
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 166 DGFTLLNEGKPEDKPDDIEDVDINIKINLE-----EIVENNVHLVDLWKDDSEQPQKPKT 220
DG T+ N PE ++ +D DI I + E + ++ + + S +PQ KT
Sbjct: 26 DGVTVSNAKSPEQASEESDDSDIEFIIETKPGERAEPLGGSIATLGSTR-PSAKPQVEKT 84
Query: 221 PSHIEVATDEIENENFLEETVVKPPVELPEIPVLD 255
+EV T E ++ L P V++ +P +D
Sbjct: 85 A--VEVKTTEPQD---LSTAETAPKVDIDAVPTID 114
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 980 ISTGEILQALDKLKTLSTEL-EAHKKFTDIANFKSEFAVVYERKQAERKRDKYKRLLSFE 1038
+ TG + + + ++ EL E K+ + S + V+ ++KQ +D L F
Sbjct: 217 VPTGTLNSLIASGRRVTAELYETELKYIQDLEYLSNYMVILQQKQI-LSQDTI--LSIFT 273
Query: 1039 NLSLYPDYQRRLLVLRELS 1057
NL+ D+QRR LV E++
Sbjct: 274 NLNEILDFQRRFLVGLEMN 292
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 641 GFVKILFATETFAMGVN-MPARTVVFDEITKFDGVERRTLAPAEYIQMAGRAGRRG 695
G +I+ AT+ F +G+N M R VV G+ ++ +Y+Q GRAGR G
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHY------GLPASSM---DYVQETGRAGRDG 1516
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 641 GFVKILFATETFAMGVN-MPARTVVFDEITKFDGVERRTLAPAEYIQMAGRAGRRG 695
G +I+ AT+ F +G+N M R VV G+ ++ +Y+Q GRAGR G
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHY------GLPASSM---DYVQETGRAGRDG 1516
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 861 VLNTPIQDSSRY-NFEIDENWYRMLSFSATYDAIGTEESTMDHKVLCIAPR 910
VL P D+S++ N+ I+EN+ + L F+ + E T + C+ PR
Sbjct: 283 VLLEPRIDNSKFINYLIEENYSKRLEFNFPHKRAAFMEITRNMFFSCLGPR 333
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/89 (23%), Positives = 34/89 (38%)
Query: 919 NLKIDVTRIIQDWEQRQIPRFKDAPVGASCASTVQELSRMSHAARAGAVQLERINLTHSL 978
N K++ I Q QR + R + ++ ++QLE+ N+ L
Sbjct: 652 NSKLNTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQL 711
Query: 979 AISTGEILQALDKLKTLSTELEAHKKFTD 1007
T E AL+KL L L ++ D
Sbjct: 712 TSLTSERSLALEKLNDLEKSLVLSERSKD 740
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 170 LLNEGKPEDKPDDIEDVDINIKINLEEIVENNVHLVDLWKDDSEQPQ 216
L++E DK D + D +I+ N E +N+ D W+D SE +
Sbjct: 219 LVSETVDSDKDDPLHD-EIDEDSNAESFYQNSYPDEDEWQDSSENDE 264
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,535,464
Number of Sequences: 5004
Number of extensions: 241916
Number of successful extensions: 738
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 58
length of query: 1243
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1162
effective length of database: 1,957,154
effective search space: 2274212948
effective search space used: 2274212948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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