GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005168-TA|BGIBMGA005168-PA|IPR011545|DEAD/DEAH box
helicase, N-terminal, IPR001650|Helicase, C-terminal, IPR012961|DSH,
C-terminal, IPR014021|Helicase superfamily 1 and 2 ATP-binding,
IPR014001|DEAD-like helicases, N-terminal
         (1243 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   6.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   6.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   8.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
            hyperpolarization-activated ion channelvariant L protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 980  ISTGEILQALDKLKTLSTELEAHKKFTDIANFKSEFAVVYERKQAERKRDKYKRLLSFEN 1039
            +  G  L+ L   K LS  L    + + +  + S++  VY  +  ++KR + +  LS +N
Sbjct: 199  LHAGRALRILRLAKLLS--LVRLLRLSRLVRYVSQWEEVYILQNLQKKRTRAEGRLSSDN 256

Query: 1040 LSLYPDYQRRLLVLRELS 1057
            +S     ++  L L   S
Sbjct: 257  MSKKSPVRKATLFLNMAS 274


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
            methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 1038 ENLSLYPDYQRRLLVLRELS 1057
            ENL++YP++Q  + +  E+S
Sbjct: 641  ENLNVYPEFQENVQLCSEIS 660


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 815 ILLNQSKVAKELDAGKILLVSAGPYINQLAVYLNNSGPRQTPYKVLVLNTPIQDSS 870
           +L N+  V++  D  +    S+ PY     + L        PY VLV+ +P  DS+
Sbjct: 574 VLYNRLVVSE--DGSETFKYSSQPYGFPERLLLPKGKKEGMPYNVLVVVSPFDDSN 627


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,656
Number of Sequences: 429
Number of extensions: 14883
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 3
length of query: 1243
length of database: 140,377
effective HSP length: 66
effective length of query: 1177
effective length of database: 112,063
effective search space: 131898151
effective search space used: 131898151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)