GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005166-TA|BGIBMGA005166-PA|undefined
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    31   0.40 
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    30   0.91 
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   1.6  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    29   2.8  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   6.4  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    27   6.4  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    27   8.5  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    27   8.5  

>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 78  NPSKDLEVPVKYTNGDVKKEKEEIVTNGHYT---HISKQTATDIKTTN 122
           NPS   EV  +Y+    KKE EEI+    +T   +I+K+ A  +K+ N
Sbjct: 480 NPSLFDEVDAEYSESRRKKEDEEIIREERWTILENIAKENAMKLKSQN 527


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 69  LDHDKIKLEN---PSKDLEVPVKYTNGDVKKEKEEIVTNGHYTHI---SKQTATDIKTTN 122
           LDHD + L+N     KD +     + G+   EK+E +T  H +HI    +Q  TD  T+ 
Sbjct: 428 LDHDFLYLDNLAYEKKDDDTAFDNSFGETSFEKDEDLTAKHLSHILDFKEQEETDEPTSL 487

Query: 123 TK 124
           +K
Sbjct: 488 SK 489


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 181 SNETFLDVFKREQGLVDNKVVINRES----VASVIKVPTTPPKKASAGKTHQSKQRKGRG 236
           S E  L VF  +   ++NK V+   S     A+     +  P  + +GKT+ SK     G
Sbjct: 14  STEYSLPVFSSQYSDIENKDVLKSNSWDPYAANAPIALSEIPSSSKSGKTNGSKAAVESG 73

Query: 237 PAVHEALQRISNQNRALPVPCGTWHAPGEILFSCGPLDSKRPGFRQVDTSSSDDDNIPDY 296
            A      R  N NR   +   T+ +   + ++   L S  P F    + SS    +P  
Sbjct: 74  LASGAFGNRTGNMNRNTSMSGYTFGSSNFVPYN---LLSNTPSF--TTSHSSSTTFVPPA 128

Query: 297 ESGGG 301
             GGG
Sbjct: 129 TMGGG 133


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)

Query: 202 INRESVASVIKVPTTPPKKAS 222
           + +ES+A+ +K P+TPPK+ S
Sbjct: 37  MKKESLAASVKTPSTPPKECS 57


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 18  DNSGDEQTYITPFNDNF--FTKLKIDPNELYTFHDTDV-VAGEITVSHTEDAYMLDHDKI 74
           +N   +  +I   ND     T +K D  ++ +  D+ V V GEI V+H +    L   + 
Sbjct: 118 ENLNTDLPHIFCLNDPLDELTLIKFDGKKILSLFDSIVYVVGEIVVTHNKKEKKLSFWRS 177

Query: 75  KLENPSKDLEVPV---KYTNGDVKKEKEEIVTNGHYTHISKQT 114
           +  +P  D  +     +       +EK   +T     H +  T
Sbjct: 178 RFIDPESDQSIKSSRNRRRESSFSREKNPDLTRSDSIHYTANT 220


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 36  TKLKIDPNELYTFHDT 51
           T +++DPNE++TFH T
Sbjct: 243 TAVEVDPNEVHTFHAT 258


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 206 SVASVIKVPTTPPKKASAGKTHQSKQRKGRGPAVHEALQRISNQNRAL 253
           +V  + K    P +      T   K  K  G A+HEA+Q +      L
Sbjct: 38  AVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 548 GALSENEYI--ATANNSNELEVEVGTVPSDVLLDPAVLS-QIPDEAFTEFFNQ 597
           G+L+  + I  A A N   L +E+G     ++ + A LS  IP  AF  FFNQ
Sbjct: 249 GSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLSLAIPSAAFAIFFNQ 301


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,241
Number of Sequences: 5004
Number of extensions: 83880
Number of successful extensions: 272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 9
length of query: 678
length of database: 2,362,478
effective HSP length: 78
effective length of query: 600
effective length of database: 1,972,166
effective search space: 1183299600
effective search space used: 1183299600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)