Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005166-TA|BGIBMGA005166-PA|undefined
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 32 1.3
01_01_0473 - 3478660-3480338,3480507-3480609 31 2.3
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 31 3.0
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 31 4.0
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89... 30 5.3
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 30 6.9
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 32.3 bits (70), Expect = 1.3
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 213 VPTTPPKKASAGKTHQSKQRKGRGPAVHEA--LQRISNQNRALPVPCGTWHAPGEILFSC 270
V PP K S G EA LQR+ RA+ GT APGE+ C
Sbjct: 27 VEAAPPVKRRRVAVAPSAGAGGSRRVQAEASPLQRLFRACRAVFRGTGTVPAPGEVDLLC 86
Query: 271 GPLDSKRP---GFR---QVDTSSSDDDNIP 294
LD +P G R + T+ DD+ IP
Sbjct: 87 SMLDKMKPEDVGLRADQEFFTARDDDEGIP 116
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 31.5 bits (68), Expect = 2.3
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 49 HDTDVVAGEITVSHTEDAYMLDHDKIKLENPSKDLEVPVKYTNGDVKKEKEEIVTNGHYT 108
HD ++ + + H + Y HDK LE L+ VK GD+ K +E +
Sbjct: 247 HDHEIEKCKKELEHVHEKY--SHDKSTLETEIIKLQDIVKNFEGDLAKMSQEKLQLKAQV 304
Query: 109 HISKQTATDIKTTNTKALKTKQVKEPIRRESTTSINQ 145
+Q + + ++ + +K +++ + ++R N+
Sbjct: 305 KELEQASRSLDDSSAQIMKLQEIIKDLQRRLDNDSNE 341
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 31.1 bits (67), Expect = 3.0
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 94 VKKEKEEIVTNGHYTHISKQTATDIKTTNTKALKTKQVKEPIRRESTTSINQGSGPC 150
+K+ E++V +G + +++ T I A+K+ +V+ P ST S ++G PC
Sbjct: 327 IKETFEKLVEDGKISPVTEITPPPIPEDLKTAIKSGKVRAPTHIISTISDDRGEEPC 383
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 30.7 bits (66), Expect = 4.0
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 188 VFKREQGLVDNKVVINRESVASVIKVPTTPPKKASAGKTHQSKQRKGRGPAVHEALQRIS 247
+ K L D+K+++ A I V +TP + ++KQ+K PA +Q
Sbjct: 1580 ILKEFPSLRDDKLIVTYAKKAISINVNSTPREPRLTISGSRAKQKKVAAPAKTNFVQSFG 1639
Query: 248 NQNRA-------LPVPCGTWHAPGEILFSCGPLDSKRPGFRQVDTSSSDDDNIPDYESGG 300
N R +P GT P +IL S T S ++ P+Y S G
Sbjct: 1640 NFQREARKAFSWVPRDSGTKTPPKDILRKRKSSGSGGERSSWEATPSVQEERAPEYPSEG 1699
>02_01_0121 +
890391-890429,890565-890730,891209-891769,892365-892845,
892952-893033,893818-894021
Length = 510
Score = 30.3 bits (65), Expect = 5.3
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 70 DHDKIKLENPSKDLEVPVKYTNGDVKKEKEEIVTNGHYTHISKQTATDIKTTNTKALKTK 129
DH + K+E + +EV V+ + + + + +T K+ A ++K + A KT
Sbjct: 429 DHQRAKIEAEMRKIEVDVERMRARAQDKLMSQLASARHTADEKRAAAELKRSRA-AAKTA 487
Query: 130 QVKEPIRR 137
+ + IRR
Sbjct: 488 EQADHIRR 495
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 29.9 bits (64), Expect = 6.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 240 HEALQRISNQNRALPVPCGTWHAPGEILFSCG-PLDSKRPGFRQVDT 285
H L + NQNR L VP GT + GE+ S P+ PG + T
Sbjct: 151 HAVLAK-GNQNRVLAVPSGTNNFTGELCCSSSDPIHVPSPGSKSAGT 196
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,857,493
Number of Sequences: 37544
Number of extensions: 508360
Number of successful extensions: 1263
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1260
Number of HSP's gapped (non-prelim): 8
length of query: 678
length of database: 14,793,348
effective HSP length: 87
effective length of query: 591
effective length of database: 11,527,020
effective search space: 6812468820
effective search space used: 6812468820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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