GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005166-TA|BGIBMGA005166-PA|undefined
         (678 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   1.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   3.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 62  HTEDAYMLDHDKIKLENPSKDLEVPVKYTNGDVKKEKEEIVTNGHYTHISKQTATDIKTT 121
           H++   M D+D   +E+ +  L +   + NGD  +  E    N    +  K   T I + 
Sbjct: 497 HSQVLSMSDYDISNIEHEALLLVITSTFGNGDPPENGEAFAQN---LYAMKMNETYINSG 553

Query: 122 NTKALKTKQVKEPIRRESTTSIN 144
           N  +L T   K  I+  S T ++
Sbjct: 554 NKISLATS--KSFIKANSQTEVS 574


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 205 ESVASVIKVPTTPPKKASAGKTHQSKQRKGRGPAVHEALQRISNQNRALPV 255
           +S+ +V K+P T   K+   K H +K  K +      +   +S+   A+ V
Sbjct: 224 KSIRAVTKLPDTSMAKSFVRKVHATKPPKPQTKTKPTSPYHVSDHKAAITV 274


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,520
Number of Sequences: 429
Number of extensions: 5416
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 678
length of database: 140,377
effective HSP length: 62
effective length of query: 616
effective length of database: 113,779
effective search space: 70087864
effective search space used: 70087864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)