Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005162-TA|BGIBMGA005162-PA|IPR000911|Ribosomal protein
L11, IPR006519|Ribosomal protein L11, bacterial
(196 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1... 100 2e-22
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 29 0.35
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 29 0.46
SPAC1782.03 |||microfibrillar-associated protein family protein|... 27 1.4
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 1.4
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 1.8
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 3.2
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 26 4.3
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 25 5.6
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 5.6
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 25 7.4
SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom... 25 9.8
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 9.8
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 9.8
>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 100 bits (239), Expect = 2e-22
Identities = 40/113 (35%), Positives = 68/113 (60%)
Query: 46 RNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGA 105
R + FCK+FN +TA P+P ++ V R++ IH PP S+ + + + KG+
Sbjct: 31 RGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFTFTIHTPPTSWLISKTLDLEKGS 90
Query: 106 MEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIV 158
P+ + G+++LKH+YEIAK+K DP L+ L +C +I TA++ G+++V
Sbjct: 91 SSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLCKSVIGTAKSMGVKVV 143
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 29.5 bits (63), Expect = 0.35
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 94 FLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTC 153
F KQ K A +RE + I+ H Y A++ + D +E K QE+ + ATA+
Sbjct: 142 FYKQGVSSVKAAFAKLREANVLISRPHDY-FAEMLKSDDHME-KVRQEL--IKEATAKKL 197
Query: 154 GIEIVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
+ K+ + K++G+ ++ K+ EE+++ +E E
Sbjct: 198 SQQAKKQRELKKFGKQVQLAKQ--EERQREKKETLE 231
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 29.1 bits (62), Expect = 0.46
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 158 VKELDPKEYGEFLEERKKIVEEQKKMLQEKREAK 191
V + K+ + EE K+VE+ +K LQEK EA+
Sbjct: 555 VMSYELKDDDNYNEELDKLVEDVRKKLQEKEEAE 588
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 157 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKREAKMLRTA 196
++++ KE LE K +EE++ M E+REA+ L+ A
Sbjct: 202 LLRKKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDA 241
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 138 SLQEICTMLIATARTCGIEIVKELDPKEYGEFLEERKKIVEE 179
SL+EI +R +E +K+L P E+ F+++ K +VEE
Sbjct: 920 SLREIIREEDQLSRVTLLEYLKQLHPVEWDCFVKDTKILVEE 961
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 158 VKELDPKEYGEF-LEERKKIVEEQKKMLQEKREAKMLR 194
+KEL+ E L+E+++ EE+ + L+EK EA+ LR
Sbjct: 124 MKELEKLEKERIRLQEQQRRKEERDQKLREKEEAQRLR 161
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 159 KELDPKEYGEFLEERKKIVEEQKKMLQEKREAK 191
KE KE +EE+K EQ+++ QE+ +AK
Sbjct: 144 KEKKEKERIRLIEEQKHKENEQRRLKQEQIDAK 176
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 127 IKQQDPPLEWKSLQEICTMLIATARTCGIEIVKELD--PKEYGEFLEERK 174
+ Q DPPL+ KS C A G+ IV D +EY E L RK
Sbjct: 331 VLQLDPPLDPKSFSHRCGR-AGRAGRAGVAIVLLNDGREEEYEELLRVRK 379
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 94 FLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQE 141
F+K AG GA+ PVRE + + E+ + ++ E K ++E
Sbjct: 447 FVKNVAGHLSGAISPVRERQYGVFTRVDSELGRRIREATEAEVKKMEE 494
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 155 IEIVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
++I K +D +EY + + + VEE +K LQ+ RE
Sbjct: 421 LKIKKPIDMEEYSKVSGKVFRPVEEMEKELQKIRE 455
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 155 IEIVKELDPKEYGEFLEERKKIVEEQKKMLQEKREAKMLRTA 196
+E KE+ EF E+ KIV EQ + + + K+ R +
Sbjct: 24 LEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRAS 65
>SPBC32F12.03c |gpx1||glutathione peroxidase
Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 158
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 118 LKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCG 154
+ H Y++A + P + +L+ +++ TA CG
Sbjct: 1 MSHFYDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCG 37
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 96 KQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQE 141
K AA +K E S K L EI + P + W LQE
Sbjct: 106 KPAANNTKADAEACLLKSKNYIKKSLQEIVYLTNMQPNVSWNVLQE 151
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 156 EIVKELDPKEYGEFLEERKKIVEEQK 181
EIV L P + GE EE KK + +K
Sbjct: 743 EIVPNLPPADVGELNEEPKKSKKSKK 768
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,806
Number of Sequences: 5004
Number of extensions: 27619
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 14
length of query: 196
length of database: 2,362,478
effective HSP length: 69
effective length of query: 127
effective length of database: 2,017,202
effective search space: 256184654
effective search space used: 256184654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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