Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005162-TA|BGIBMGA005162-PA|IPR000911|Ribosomal protein
L11, IPR006519|Ribosomal protein L11, bacterial
(196 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005002-1|AAH05002.1| 192|Homo sapiens mitochondrial ribosomal... 136 5e-32
AK223112-1|BAD96832.1| 192|Homo sapiens mitochondrial ribosomal... 136 5e-32
AF151871-1|AAD34108.1| 192|Homo sapiens CGI-113 protein protein. 136 5e-32
AB049638-1|BAB40843.1| 192|Homo sapiens mitochondrial ribosomal... 136 5e-32
BC108277-1|AAI08278.1| 166|Homo sapiens mitochondrial ribosomal... 135 1e-31
AB051338-1|BAB54928.1| 61|Homo sapiens mitochondrial ribosomal... 63 5e-10
D42054-1|BAA07654.2| 475|Homo sapiens KIAA0092 protein. 34 0.28
BC001233-1|AAH01233.1| 500|Homo sapiens centrosomal protein 57k... 34 0.28
AY239292-1|AAP72184.1| 500|Homo sapiens proliferation-inducing ... 34 0.28
BC031002-1|AAH31002.1| 247|Homo sapiens ATPase, H+ transporting... 31 3.5
BC025373-1|AAH25373.1| 247|Homo sapiens ATPase, H+ transporting... 31 3.5
BC001411-1|AAH01411.1| 247|Homo sapiens ATPase, H+ transporting... 31 3.5
AF145316-1|AAD33953.1| 247|Homo sapiens vacuolar proton pump de... 31 3.5
AF104629-1|AAG30726.1| 247|Homo sapiens vacuolar H-ATPase subun... 31 3.5
AF100741-1|AAD40384.1| 247|Homo sapiens vacuolar H-ATPase subun... 31 3.5
AF077614-1|AAG43047.1| 247|Homo sapiens vacuolar ATP synthase s... 31 3.5
U80458-1|AAD00355.1| 1604|Homo sapiens microtubule associated pr... 30 4.6
AF200415-1|AAF08305.2| 1825|Homo sapiens proliferation-related p... 30 4.6
U20938-1|AAB51366.1| 1025|Homo sapiens dihydropyrimidine dehydro... 29 8.0
U09178-1|AAA57474.1| 1025|Homo sapiens dihydropyrimidine dehydro... 29 8.0
BX908805-1|CAI15125.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 8.0
BC131778-1|AAI31779.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 8.0
BC131777-1|AAI31778.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 8.0
BC015349-1|AAH15349.1| 260|Homo sapiens coiled-coil domain cont... 29 8.0
AY481572-1|AAS49899.1| 2240|Homo sapiens death inducer-obliterat... 29 8.0
AL356457-3|CAH70570.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 8.0
AL035669-17|CAI95769.1| 1174|Homo sapiens death inducer-oblitera... 29 8.0
AK098567-1|BAC05336.1| 260|Homo sapiens protein ( Homo sapiens ... 29 8.0
AF007217-1|AAD09135.1| 1978|Homo sapiens Trip230 protein. 29 8.0
AB003063-1|BAA89789.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 8.0
>BC005002-1|AAH05002.1| 192|Homo sapiens mitochondrial ribosomal
protein L11 protein.
Length = 192
Score = 136 bits (329), Expect = 5e-32
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
Query: 45 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 104
QR ++I FCK+FNE+T +IK+GIPLPT++ V DR++ + I QP SYFLK AAGI KG
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100
Query: 105 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 162
A + +E +G +TLKH+YEIA+IK QD L+ L + +I +AR+ GI +VK+L
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160
Query: 163 PKEYGEFLEERKKIVEEQKK 182
+E F +ER + QK+
Sbjct: 161 SEELAAFQKERAIFLAAQKE 180
>AK223112-1|BAD96832.1| 192|Homo sapiens mitochondrial ribosomal
protein L11 isoform a variant protein.
Length = 192
Score = 136 bits (329), Expect = 5e-32
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
Query: 45 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 104
QR ++I FCK+FNE+T +IK+GIPLPT++ V DR++ + I QP SYFLK AAGI KG
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100
Query: 105 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 162
A + +E +G +TLKH+YEIA+IK QD L+ L + +I +AR+ GI +VK+L
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160
Query: 163 PKEYGEFLEERKKIVEEQKK 182
+E F +ER + QK+
Sbjct: 161 SEELAAFQKERAIFLAAQKE 180
>AF151871-1|AAD34108.1| 192|Homo sapiens CGI-113 protein protein.
Length = 192
Score = 136 bits (329), Expect = 5e-32
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
Query: 45 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 104
QR ++I FCK+FNE+T +IK+GIPLPT++ V DR++ + I QP SYFLK AAGI KG
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100
Query: 105 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 162
A + +E +G +TLKH+YEIA+IK QD L+ L + +I +AR+ GI +VK+L
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160
Query: 163 PKEYGEFLEERKKIVEEQKK 182
+E F +ER + QK+
Sbjct: 161 SEELAAFQKERAIFLAAQKE 180
>AB049638-1|BAB40843.1| 192|Homo sapiens mitochondrial ribosomal
protein L11 (L11mt) protein.
Length = 192
Score = 136 bits (329), Expect = 5e-32
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
Query: 45 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 104
QR ++I FCK+FNE+T +IK+GIPLPT++ V DR++ + I QP SYFLK AAGI KG
Sbjct: 41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100
Query: 105 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 162
A + +E +G +TLKH+YEIA+IK QD L+ L + +I +AR+ GI +VK+L
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160
Query: 163 PKEYGEFLEERKKIVEEQKK 182
+E F +ER + QK+
Sbjct: 161 SEELAAFQKERAIFLAAQKE 180
>BC108277-1|AAI08278.1| 166|Homo sapiens mitochondrial ribosomal
protein L11 protein.
Length = 166
Score = 135 bits (326), Expect = 1e-31
Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 2/140 (1%)
Query: 45 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 104
+R ++I FCK+FNE+T +IK+GIPLPT++ V DR++ + I QP SYFLK AAGI KG
Sbjct: 15 ERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 74
Query: 105 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 162
A + +E +G +TLKH+YEIA+IK QD L+ L + +I +AR+ GI +VK+L
Sbjct: 75 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 134
Query: 163 PKEYGEFLEERKKIVEEQKK 182
+E F +ER + QK+
Sbjct: 135 SEELAAFQKERAIFLAAQKE 154
>AB051338-1|BAB54928.1| 61|Homo sapiens mitochondrial ribosomal
protein L11 protein.
Length = 61
Score = 63.3 bits (147), Expect = 5e-10
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 86 IHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQD 131
I QP SYFLK AAGI KGA + +E +G +TLKH+YEIA+IK QD
Sbjct: 2 IGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQD 47
>D42054-1|BAA07654.2| 475|Homo sapiens KIAA0092 protein.
Length = 475
Score = 34.3 bits (75), Expect = 0.28
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 68 IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAKI 127
IPL +V +S L + PP+S + + +S+ ++ +++ G+++ H ++AK+
Sbjct: 305 IPLAKQVSSRGGKSKKLSV-TPPSSNGINEE--LSE-VLQTLQDEFGQMSFDH-QQLAKL 359
Query: 128 KQQDPPLEWKSLQEICTM--LIAT--ARTCGIEIVKELDPKEYGEFLEERKKIVEEQKKM 183
Q+ P +E K E C + L+ A+ I V++ + + LE++KK ++ KK
Sbjct: 360 IQESPTVELKDKLE-CELEALVGRMEAKANQITKVRKYQAQLEKQKLEKQKKELKATKKT 418
Query: 184 LQEKREA 190
L E+R +
Sbjct: 419 LDEERNS 425
>BC001233-1|AAH01233.1| 500|Homo sapiens centrosomal protein 57kDa
protein.
Length = 500
Score = 34.3 bits (75), Expect = 0.28
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 68 IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAKI 127
IPL +V +S L + PP+S + + +S+ ++ +++ G+++ H ++AK+
Sbjct: 330 IPLAKQVSSRGGKSKKLSV-TPPSSNGINEE--LSE-VLQTLQDEFGQMSFDH-QQLAKL 384
Query: 128 KQQDPPLEWKSLQEICTM--LIAT--ARTCGIEIVKELDPKEYGEFLEERKKIVEEQKKM 183
Q+ P +E K E C + L+ A+ I V++ + + LE++KK ++ KK
Sbjct: 385 IQESPTVELKDKLE-CELEALVGRMEAKANQITKVRKYQAQLEKQKLEKQKKELKATKKT 443
Query: 184 LQEKREA 190
L E+R +
Sbjct: 444 LDEERNS 450
>AY239292-1|AAP72184.1| 500|Homo sapiens proliferation-inducing
protein 8 protein.
Length = 500
Score = 34.3 bits (75), Expect = 0.28
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 68 IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAKI 127
IPL +V +S L + PP+S + + +S+ ++ +++ G+++ H ++AK+
Sbjct: 330 IPLAKQVSSRGGKSKKLSV-TPPSSNGINEE--LSE-VLQTLQDEFGQMSFDH-QQLAKL 384
Query: 128 KQQDPPLEWKSLQEICTM--LIAT--ARTCGIEIVKELDPKEYGEFLEERKKIVEEQKKM 183
Q+ P +E K E C + L+ A+ I V++ + + LE++KK ++ KK
Sbjct: 385 IQESPTVELKDKLE-CELEALVGRMEAKANQITKVRKYQAQLEKQKLEKQKKELKATKKT 443
Query: 184 LQEKREA 190
L E+R +
Sbjct: 444 LDEERNS 450
>BC031002-1|AAH31002.1| 247|Homo sapiens ATPase, H+ transporting,
lysosomal 34kDa, V1 subunit D protein.
Length = 247
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 157 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
I+ ELD +E EF R K ++E+KK+L+EK E
Sbjct: 187 IITELDEREREEFY--RLKKIQEKKKILKEKSE 217
>BC025373-1|AAH25373.1| 247|Homo sapiens ATPase, H+ transporting,
lysosomal 34kDa, V1 subunit D protein.
Length = 247
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 157 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
I+ ELD +E EF R K ++E+KK+L+EK E
Sbjct: 187 IITELDEREREEFY--RLKKIQEKKKILKEKSE 217
>BC001411-1|AAH01411.1| 247|Homo sapiens ATPase, H+ transporting,
lysosomal 34kDa, V1 subunit D protein.
Length = 247
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 157 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
I+ ELD +E EF R K ++E+KK+L+EK E
Sbjct: 187 IITELDEREREEFY--RLKKIQEKKKILKEKSE 217
>AF145316-1|AAD33953.1| 247|Homo sapiens vacuolar proton pump delta
polypeptide protein.
Length = 247
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 157 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
I+ ELD +E EF R K ++E+KK+L+EK E
Sbjct: 187 IITELDEREREEFY--RLKKIQEKKKILKEKSE 217
>AF104629-1|AAG30726.1| 247|Homo sapiens vacuolar H-ATPase subunit
D protein.
Length = 247
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 157 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
I+ ELD +E EF R K ++E+KK+L+EK E
Sbjct: 187 IITELDEREREEFY--RLKKIQEKKKILKEKSE 217
>AF100741-1|AAD40384.1| 247|Homo sapiens vacuolar H-ATPase subunit
D protein.
Length = 247
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 157 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
I+ ELD +E EF R K ++E+KK+L+EK E
Sbjct: 187 IITELDEREREEFY--RLKKIQEKKKILKEKSE 217
>AF077614-1|AAG43047.1| 247|Homo sapiens vacuolar ATP synthase
subunit D homolog protein.
Length = 247
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 157 IVKELDPKEYGEFLEERKKIVEEQKKMLQEKRE 189
I+ ELD +E EF R K ++E+KK+L+EK E
Sbjct: 187 IITELDEREREEFY--RLKKIQEKKKILKEKSE 217
>U80458-1|AAD00355.1| 1604|Homo sapiens microtubule associated protein
1A protein.
Length = 1604
Score = 30.3 bits (65), Expect = 4.6
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 127 IKQQDPPLEWKS--LQEICTMLIATARTCGIEIVKELDPKEYGEFLEERKKIVEEQKKML 184
+KQQD LE K L++ T L + +E K+ D +E + LE++ KI EE+ K L
Sbjct: 1318 VKQQDKALEQKGRDLEQKDTAL--EQKDKALE-PKDKDLEEKDKALEQKDKIPEEKDKAL 1374
Query: 185 QEKREA 190
++K A
Sbjct: 1375 EQKDTA 1380
>AF200415-1|AAF08305.2| 1825|Homo sapiens proliferation-related
protein P80 protein.
Length = 1825
Score = 30.3 bits (65), Expect = 4.6
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 127 IKQQDPPLEWKS--LQEICTMLIATARTCGIEIVKELDPKEYGEFLEERKKIVEEQKKML 184
+KQQD LE K L++ T L + +E K+ D +E + LE++ KI EE+ K L
Sbjct: 1401 VKQQDKALEQKGRDLEQKDTAL--EQKDKALE-PKDKDLEEKDKALEQKDKIPEEKDKAL 1457
Query: 185 QEKREA 190
++K A
Sbjct: 1458 EQKDTA 1463
>U20938-1|AAB51366.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 157 IVKELDPK--EYGEFLEERKKIVEEQKKMLQEKREA 190
I + +D K +G +LE+RKKI+ E K L+E+ A
Sbjct: 868 IAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVA 903
>U09178-1|AAA57474.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 157 IVKELDPK--EYGEFLEERKKIVEEQKKMLQEKREA 190
I + +D K +G +LE+RKKI+ E K L+E+ A
Sbjct: 868 IAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVA 903
>BX908805-1|CAI15125.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 157 IVKELDPK--EYGEFLEERKKIVEEQKKMLQEKREA 190
I + +D K +G +LE+RKKI+ E K L+E+ A
Sbjct: 868 IAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVA 903
>BC131778-1|AAI31779.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 157 IVKELDPK--EYGEFLEERKKIVEEQKKMLQEKREA 190
I + +D K +G +LE+RKKI+ E K L+E+ A
Sbjct: 868 IAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVA 903
>BC131777-1|AAI31778.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 157 IVKELDPK--EYGEFLEERKKIVEEQKKMLQEKREA 190
I + +D K +G +LE+RKKI+ E K L+E+ A
Sbjct: 868 IAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVA 903
>BC015349-1|AAH15349.1| 260|Homo sapiens coiled-coil domain
containing 127 protein.
Length = 260
Score = 29.5 bits (63), Expect = 8.0
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 168 EFLEERKKIVEEQKKMLQEKREAKMLRTA 196
+ +EE+K + +E+ +++QEKR+ + LR+A
Sbjct: 112 KLVEEKKLLEQERAQVMQEKRQVQPLRSA 140
>AY481572-1|AAS49899.1| 2240|Homo sapiens death inducer-obliterator-3
protein.
Length = 2240
Score = 29.5 bits (63), Expect = 8.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 165 EYGEFLEERKKIVEEQKKMLQEKREA 190
E + LEE K +EEQK+ L+E+ EA
Sbjct: 1474 EQQKMLEELNKQIEEQKRQLEEQEEA 1499
>AL356457-3|CAH70570.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 157 IVKELDPK--EYGEFLEERKKIVEEQKKMLQEKREA 190
I + +D K +G +LE+RKKI+ E K L+E+ A
Sbjct: 868 IAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVA 903
>AL035669-17|CAI95769.1| 1174|Homo sapiens death inducer-obliterator
1 protein.
Length = 1174
Score = 29.5 bits (63), Expect = 8.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 165 EYGEFLEERKKIVEEQKKMLQEKREA 190
E + LEE K +EEQK+ L+E+ EA
Sbjct: 408 EQQKMLEELNKQIEEQKRQLEEQEEA 433
>AK098567-1|BAC05336.1| 260|Homo sapiens protein ( Homo sapiens
cDNA FLJ25701 fis, clone TST04731. ).
Length = 260
Score = 29.5 bits (63), Expect = 8.0
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 168 EFLEERKKIVEEQKKMLQEKREAKMLRTA 196
+ +EE+K + +E+ +++QEKR+ + LR+A
Sbjct: 112 KLVEEKKLLEQERAQVMQEKRQVQPLRSA 140
>AF007217-1|AAD09135.1| 1978|Homo sapiens Trip230 protein.
Length = 1978
Score = 29.5 bits (63), Expect = 8.0
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 117 TLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGI-EIVKELDPKEYGEFLEERKK 175
T+++L I I+++D +E +L + C L+A +T ++ ++ E L+ER K
Sbjct: 1158 TIQNLSRI--IREKD--IEIDALSQKCQTLLAVLQTSSTGNEAGGVNSNQFEELLQERDK 1213
Query: 176 IVEEQKKMLQEKRE 189
+ ++ KKM + K++
Sbjct: 1214 LKQQVKKMEEWKQQ 1227
>AB003063-1|BAA89789.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 8.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 157 IVKELDPK--EYGEFLEERKKIVEEQKKMLQEKREA 190
I + +D K +G +LE+RKKI+ E K L+E+ A
Sbjct: 868 IAELMDKKLPSFGPYLEQRKKIIAENKIRLKEQNVA 903
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.316 0.130 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,352,848
Number of Sequences: 224733
Number of extensions: 871592
Number of successful extensions: 4507
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4469
Number of HSP's gapped (non-prelim): 49
length of query: 196
length of database: 73,234,838
effective HSP length: 86
effective length of query: 110
effective length of database: 53,907,800
effective search space: 5929858000
effective search space used: 5929858000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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